Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01470 ATGCAAGTTCTTAGTTACATTTGTTTTGTTGTGACGTTTTGCTTTCTGCTCCTAAACCCTAGCCATGGTCTGAATCTGAAATCATTAAATTATTCCAAAGTTAAAAACGATAATGAATGGAATGTAGGAGCAGCTACATGGTACGGAGAAGCAGAGGGTGCTGGATCTGATGGTGGTGCTTGTGGATATGGTGAGAGTGTGGAGAAACCTCCACTCTCTAAAATGATATCAGCTGGAGGTTCTTCTCTTTTTAGTGGAGGCAGAGGATGTGGAGCTTGTTATCAGGTGAAATGCACTAAATACCCAGCTTGTTCGGGAAATCCAGTGAGTGTGATGATAAGTGATGAATGCCCTGACTGTCACTTAGCATCAGTCCATTTTGATCTCAGTGGCACTGCACTTGGTTCCATGGCATCTCCAGGAAAAGCAAACAATCTTCGTAACGTTGGACAGCTTCAAATTCTATACAAAAGGGTTGCATGCTCCTTCGGGAACTCCATAGCCTTTACCATCGACGAAGGGGCGAACCCATACTATTTTGCAGCTGAAATAGAATACGAAAATGGGGATGGTGACCTTGTGGAGGTTCAGGTGAAGCAAGCTAACTCTGACACGTGGCTTCCGATGCGACGTTCATGGGGTTCACGCTGGGCTTTGAACTTTGGTTCAGGGCTGAAACCACCGTTCTCCATTAAGCTCACTGAAGATGGCAACAACAACGGAAGGAACACCATTGTCGCTCGTAATGTAATTCCATCTCACTGGAAACCTGGTCAAGTTTATCGATCTGTTGTTAATTTTTAA 804 0.4428 MQVLSYICFVVTFCFLLLNPSHGLNLKSLNYSKVKNDNEWNVGAATWYGEAEGAGSDGGACGYGESVEKPPLSKMISAGGSSLFSGGRGCGACYQVKCTKYPACSGNPVSVMISDECPDCHLASVHFDLSGTALGSMASPGKANNLRNVGQLQILYKRVACSFGNSIAFTIDEGANPYYFAAEIEYENGDGDLVEVQVKQANSDTWLPMRRSWGSRWALNFGSGLKPPFSIKLTEDGNNNGRNTIVARNVIPSHWKPGQVYRSVVNF 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01470 267 Gene3D - 25 162 IPR036908 -
Viun10g01470 267 PRINTS Major pollen allergen Lol pI signature 185 200 IPR005795 GO:0005576|GO:0019953
Viun10g01470 267 PRINTS Major pollen allergen Lol pI signature 239 256 IPR005795 GO:0005576|GO:0019953
Viun10g01470 267 PRINTS Major pollen allergen Lol pI signature 98 108 IPR005795 GO:0005576|GO:0019953
Viun10g01470 267 PRINTS Major pollen allergen Lol pI signature 138 153 IPR005795 GO:0005576|GO:0019953
Viun10g01470 267 PRINTS Major pollen allergen Lol pI signature 78 89 IPR005795 GO:0005576|GO:0019953
Viun10g01470 267 PRINTS Major pollen allergen Lol pI signature 169 184 IPR005795 GO:0005576|GO:0019953
Viun10g01470 267 PRINTS Expansin/Lol pI family signature 149 165 IPR007118 GO:0005576
Viun10g01470 267 PRINTS Expansin/Lol pI family signature 39 54 IPR007118 GO:0005576
Viun10g01470 267 PRINTS Expansin/Lol pI family signature 80 98 IPR007118 GO:0005576
Viun10g01470 267 PRINTS Expansin/Lol pI family signature 57 75 IPR007118 GO:0005576
Viun10g01470 267 PRINTS Expansin/Lol pI family signature 206 220 IPR007118 GO:0005576
Viun10g01470 267 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 178 263 IPR007117 -
Viun10g01470 267 Pfam Lytic transglycolase 77 142 IPR009009 -
Viun10g01470 267 SUPERFAMILY PHL pollen allergen 166 263 IPR036749 -
Viun10g01470 267 Pfam Expansin C-terminal domain 167 252 IPR007117 -
Viun10g01470 267 CDD DPBB_EXPB_N 40 161 - -
Viun10g01470 267 PANTHER EXPANSIN-B3 15 267 - -
Viun10g01470 267 Gene3D - 163 267 IPR036749 -
Viun10g01470 267 SUPERFAMILY Barwin-like endoglucanases 38 163 IPR036908 -
Viun10g01470 267 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 58 166 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01470 Viun-Chr10 29150547 29152461 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01470 19 267 Expansin Gene Family AT1G65680 52.756 8.42e-94 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01470 - - var:108346495 447.588