Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01468 ATGAGCCAACGTGTCCCTAGCTGTGATGTGGACGACAACACCATTCCCATACCCTCAAAATTCCCTCTTATTTCCACCTCCAATTTCATGACCTATGAAGTTCCAATGTTGGGCTACAAAGTGGCATGCAAAAAGGGACAACCTTCCACCCCTGGGAACCAAACAACATGGGAGATACCTCGTACAAGTGGAACCTTGGAGTCCATAGTCAACCATGGTATCGCCAAAAACTGCCACAACTTACTTACTAAGGACGCCTTAGTACCCTGTTTTCCCAAACAGGGCACAGTGTTCGGCGCGTGCAAGAAGGGTTACCCCGGGCGCGTGGACTCTGGGGTGGTGGCGCGTGGTCCCCCTACGTATGACTTGAGTGGCGGCAAGGACTCCAGTATGAGTGGTAGTGACACCTGTCCGAGGGAGTTGAGCGTGACTTTCAATTCAGCCACCATGGGTTCGCCGGAAAACACCAGTAGCTCCGGAAAGCAGTGTACGGAGACCACTGCCAACGACGACCGTGATTCCGTAAGCCACCGTAGATCGCAGAGTGAGGCACGGGAAGAAGATTGCAAGACAAGTGGAGTTGATAGATCTTGTGAATCCAACAAAAGAATAAAAGCTTCAGCTGTACACAACCAATCTGAAAGGAGAAGGAGAGATAAGATCAACCAAAGAATGAAGGAATTGCAAAAGCTGGTCCCAAATTCCAGCAAGACAGACAAAGCTTCGATGCTGGATGAGGTTATCCAATACATGAAGCAACTGCAAGCACATTTGCAAATGATGAATTGGATGAAAATGTACTCGTCGATGATGCTGCCAATTACCATGCAACAGCAACAACTTAAGATGTCCATGATGATGGCTCAAATGGGCATTGGAATGAGAATGAACAAGGACATGGCTATGAATATGAACATGAATATGGATATGAATATGAATATGAACAACATGAACATTCCCACCATTGCTCCCATGCTCCATCTTCCTCCCTTTATGCCTATGGCTCCATGTGGTGATCGATTACTAGCAGAACCAGAAAAGTCAGTGACAGTGGATGCATACAGAAAGATGGCTGCACTCTATAATCAGATGTATCAACTTTCAGATTCAAGTTCCAAGAAATGA 1125 0.4658 MSQRVPSCDVDDNTIPIPSKFPLISTSNFMTYEVPMLGYKVACKKGQPSTPGNQTTWEIPRTSGTLESIVNHGIAKNCHNLLTKDALVPCFPKQGTVFGACKKGYPGRVDSGVVARGPPTYDLSGGKDSSMSGSDTCPRELSVTFNSATMGSPENTSSSGKQCTETTANDDRDSVSHRRSQSEAREEDCKTSGVDRSCESNKRIKASAVHNQSERRRRDKINQRMKELQKLVPNSSKTDKASMLDEVIQYMKQLQAHLQMMNWMKMYSSMMLPITMQQQQLKMSMMMAQMGIGMRMNKDMAMNMNMNMDMNMNMNNMNIPTIAPMLHLPPFMPMAPCGDRLLAEPEKSVTVDAYRKMAALYNQMYQLSDSSSKK 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01468 374 MobiDBLite consensus disorder prediction 166 196 - -
Viun10g01468 374 Gene3D - 200 266 IPR036638 GO:0046983
Viun10g01468 374 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 207 272 IPR036638 GO:0046983
Viun10g01468 374 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 136 363 IPR031066 -
Viun10g01468 374 SMART finulus 211 260 IPR011598 GO:0046983
Viun10g01468 374 FunFam transcription factor UNE10 isoform X1 200 265 - -
Viun10g01468 374 Pfam Helix-loop-helix DNA-binding domain 209 255 IPR011598 GO:0046983
Viun10g01468 374 MobiDBLite consensus disorder prediction 125 165 - -
Viun10g01468 374 CDD bHLH_AtPIF_like 205 267 IPR047265 -
Viun10g01468 374 MobiDBLite consensus disorder prediction 109 196 - -
Viun10g01468 374 Coils Coil 211 231 - -
Viun10g01468 374 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 205 254 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01468 Viun-Chr10 29069695 29073673 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01468 1 268 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 39.542 4.70e-42 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun10g01468 HLH 1.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01468 - - gmx:100820284 415.616