Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01461 ATGTGGTTTTTGAGGGGACTTCAATCAATTGATCTTTCAAACAACTTGCTGGAGGGGGAGATTGCAGAAGGAATTCAGAATCTGATTGATTTGAGGGAGTTGAGGCTGGGGAGGAACCTCTTCACTGGTAGGATTCCTGAGCATATTGGAGAGTGTTTGCTTTTGAAGTTGGTTGATTTCAGCAGCAATTCTCTCTCTGGGAGAGTTCCTGAGTCAATGCAAAAGCTCAGTTCATGCACATTTCTCAGCTTGCAAGGGAATTCATTCTCTGGTGGCATTCCACATTGGATTGGAGAAATGAAAAGTCTAGATACATTGGATCTTTCTGAAAACAGATTTTCTGGTTGGATTCCAAAGTCCATAGGAAATCTTGACTTGATGAGTAGGTTGAATCTTTCAAGGAATCAGATCACAGGAAACCTGCCAGAGTTGATGGTAAACTGCATTAAGCTTTTGACTCTTGACCTCAGCCACAATCACTTGGCAGGCCATCTTCCTTCATGGATATTTCGGATGGGTTTGCAAAGTATCTCTCTTTCTGGGAATGGCTTCAGTGATGGAAATTATCCCTCACTTTCTTCCGTTTCTGTATCTTTTCATGGCCTTCAGGTTTTGGATTTATCATCAAATGCATTTTTTGGCCAACTTCCATCTGGAATTGGAGGTCTTGGTAGCTTGCAAGTCTTGAATTTGTCCTCCAACAATATCTCAGGTTCTATTCCTGTGAGTTTAGGAGACCTTAAATCTTTGTACATTCTTGACTTAAGTGGCAACAAGCTCAATGGAAGCATTCCTTCTGCAATAGAAGGAGCAACATCACTCAGTGAAATGAGGCTACAAAAGAACTTCCTAGGTGGGAGAATTCCAGCCCAAATTGATAAGTGTTCAGAACTAACATTACTGAATTTATCTCACAACAAGCTTATTGGCTCAATTCCTTCATCCATAGCAAACCTAACCAATCTTCAGGATGTAGATTTCTCATGGAATGAACTCTCTGGAAGCTTACCAAAGGAGCTGACAAATCTCTCCAACCTGTTCTCCTTTAATGTTTCACACAACCACCTTCAAGGTGAGCTACCAGTGGGTGGTTTCTTCAACACCATTTCTCCTTCATCTGTCTCTGGTAATCCATTGTTATGTGGTTCTGTTGTTAACCACTCATGCCCTTCTGTTCATCCAAAGCCTATAGTGCTGAACCCCAATTCTTCATACTCCAGTTCTGGCTCTTCATTCCAAAACCATCACCATAAGATTATGCTAAGTATCTCTGTCCTCATTGCTATTGGTGCTGCTATTTTTATTGTCATTGGTGTGGTGGTTGTTACTGTTCTAAATATCCATGTGAGGTCTTCAATGCCTCTTTCTGCTACTCCGTTTATATTCTCTGGTGGTGAGGACTATAGCGGTTCACCCGGGAATGATCCAAACCATGGCAAGCTTGTGATGTTTAATGGTGATGCAGAATTTGCTGATGGTGCTCATAATCTTCTTAACAAAGACAGTGAAATAGGTCGCGGTGGATTTGGAGTTGTTTATTGCACTGTCCTCAGAGATGGTCATTGTGTTGCAATCAAGAAGCTTACATTATCCACCTTAACCAAGTCACAAGAAGACTTTGAGAGGGAAGTTAAAATGCTTGGGAAGATCAAGCATAAAAATATTGTGGCACTTGAAGGTTATTATTGGACTCAATCCTTGCAGCTCCTAATTTATGAGTACCTAGCCAGAGGGAGTTTGCAGAAGCTTCTTCATGATGATGATAGCAGCAAAAAGATACTTTCTTGGAGAAAAAGGTTCAAGATCATACTTGGAATTGCAAGAGGGTTGGCCTATTTGCATCAAATGGAGTTGATTCATTACAATTTAAAGTCAACAAATGTGTTCATAGATTGTTCTGATGAGGCAAAGATAGGAGATTTTGGGTTGGTGAGGCTTCTTCCAATGCTGGACCCTTGTGTTTTGAGCAGCAAAATTCAAAGTGCACTTGGCTACATGGCTCCTGAGTTTGCTTGCCGCACAGTGAAGATAACTGAGAAGTGTGACATATACAGTTTTGGAATTTTGATTTTGGAAGTGGTGACAGGAAAACGACCAGTGGAATACATGGAGGATGATGTGGTTGTTCTTTGTGACAAGGTGAGAAGTGCTTTGGATGATGGCAAAGTGGAGCAATGTGTTGATGAAAATCTAAAGGGTAATTTTGCTACAGAAGAAGCAGTTCCTGTGATAAAACTGGGATTGGTTTGTGCATCACAAGTTCCCTCAAAGAGACCAGATATGGCTGAAGTGATCAACATATTGGAGTTGATCCAATGCCCTTCTGAAGAACAAGAAGAAGAAGAAGAAGAAGAAGAAATACAATGA 2367 0.4094 MWFLRGLQSIDLSNNLLEGEIAEGIQNLIDLRELRLGRNLFTGRIPEHIGECLLLKLVDFSSNSLSGRVPESMQKLSSCTFLSLQGNSFSGGIPHWIGEMKSLDTLDLSENRFSGWIPKSIGNLDLMSRLNLSRNQITGNLPELMVNCIKLLTLDLSHNHLAGHLPSWIFRMGLQSISLSGNGFSDGNYPSLSSVSVSFHGLQVLDLSSNAFFGQLPSGIGGLGSLQVLNLSSNNISGSIPVSLGDLKSLYILDLSGNKLNGSIPSAIEGATSLSEMRLQKNFLGGRIPAQIDKCSELTLLNLSHNKLIGSIPSSIANLTNLQDVDFSWNELSGSLPKELTNLSNLFSFNVSHNHLQGELPVGGFFNTISPSSVSGNPLLCGSVVNHSCPSVHPKPIVLNPNSSYSSSGSSFQNHHHKIMLSISVLIAIGAAIFIVIGVVVVTVLNIHVRSSMPLSATPFIFSGGEDYSGSPGNDPNHGKLVMFNGDAEFADGAHNLLNKDSEIGRGGFGVVYCTVLRDGHCVAIKKLTLSTLTKSQEDFEREVKMLGKIKHKNIVALEGYYWTQSLQLLIYEYLARGSLQKLLHDDDSSKKILSWRKRFKIILGIARGLAYLHQMELIHYNLKSTNVFIDCSDEAKIGDFGLVRLLPMLDPCVLSSKIQSALGYMAPEFACRTVKITEKCDIYSFGILILEVVTGKRPVEYMEDDVVVLCDKVRSALDDGKVEQCVDENLKGNFATEEAVPVIKLGLVCASQVPSKRPDMAEVINILELIQCPSEEQEEEEEEEEIQ 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01461 788 SUPERFAMILY Protein kinase-like (PK-like) 499 772 IPR011009 -
Viun10g01461 788 SUPERFAMILY RNI-like 9 363 - -
Viun10g01461 788 Gene3D Phosphorylase Kinase; domain 1 488 574 - -
Viun10g01461 788 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 4 768 - -
Viun10g01461 788 FunFam Inactive leucine-rich repeat receptor-like protein kinase 1 95 - -
Viun10g01461 788 SMART LRR_sd22_2 319 345 - -
Viun10g01461 788 SMART LRR_sd22_2 4 27 - -
Viun10g01461 788 SMART LRR_sd22_2 247 273 - -
Viun10g01461 788 SMART LRR_sd22_2 100 126 - -
Viun10g01461 788 Pfam Protein kinase domain 499 765 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g01461 788 PRINTS Leucine-rich repeat signature 247 260 - -
Viun10g01461 788 PRINTS Leucine-rich repeat signature 151 164 - -
Viun10g01461 788 Gene3D Transferase(Phosphotransferase) domain 1 575 788 - -
Viun10g01461 788 Pfam Leucine rich repeat 201 260 IPR001611 GO:0005515
Viun10g01461 788 ProSiteProfiles Leucine-rich repeat profile. 225 248 IPR001611 GO:0005515
Viun10g01461 788 FunFam Leucine-rich repeat receptor-like protein kinase PXC2 175 392 - -
Viun10g01461 788 ProSiteProfiles Protein kinase domain profile. 498 771 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g01461 788 SMART LRR_typ_2 100 124 IPR003591 -
Viun10g01461 788 SMART LRR_typ_2 343 367 IPR003591 -
Viun10g01461 788 SMART LRR_typ_2 223 246 IPR003591 -
Viun10g01461 788 SMART LRR_typ_2 4 27 IPR003591 -
Viun10g01461 788 SMART LRR_typ_2 148 172 IPR003591 -
Viun10g01461 788 SMART LRR_typ_2 28 52 IPR003591 -
Viun10g01461 788 SMART LRR_typ_2 319 342 IPR003591 -
Viun10g01461 788 SMART LRR_typ_2 199 222 IPR003591 -
Viun10g01461 788 SMART LRR_typ_2 247 271 IPR003591 -
Viun10g01461 788 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 492 574 - -
Viun10g01461 788 CDD STKc_IRAK 504 771 - -
Viun10g01461 788 FunFam LRR receptor-like serine/threonine-protein kinase 98 173 - -
Viun10g01461 788 Pfam Leucine Rich Repeat 298 319 IPR001611 GO:0005515
Viun10g01461 788 Pfam Leucine Rich Repeat 7 28 IPR001611 GO:0005515
Viun10g01461 788 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 575 777 - -
Viun10g01461 788 Gene3D Ribonuclease Inhibitor 118 392 IPR032675 -
Viun10g01461 788 Gene3D Ribonuclease Inhibitor 2 117 IPR032675 -
Viun10g01461 788 ProSitePatterns Protein kinases ATP-binding region signature. 504 527 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01461 Viun-Chr10 29020009 29023066 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01461 1 780 Receptor kinase-like Gene Family AT3G56370 58.673 0.0 888
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Viun10g01461 Pkinase 1.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01461 - - gmx:100791204 1381.31