Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01460 ATGAAGCAAGTGCAATTCATCCCATTCCTATCACTTTGTTTTGTTTTCTGTTGTCCATTCTTAGTGATCTCTGTAAATCCTCCTTTCAACGATGATGTGTTGGGGTTGATCATGTTCAAGGCTGGTCTAGAAGACCCAAAAGGAAAACTCTCTAAGTGGAATGAAGATGATTATAGTCCCTGCAACTGGGTTGGTGTCAAATGTGACCCTGTAAACAATAGGGTATCTTCTCTTGTTCTTGATGGATTCTCTCTTTCTGGCCACATTGATAGAGGTCTTCTGGGACTGCAGTTCCTTCAGATTCTGTCCCTTTCTAGGAACAACTTCACAGGGACCATAGCTCATGACCTTCTCAGCATTGGTGATTTACAAGTTGTTGATTTGAGTGAGAACAACCTCTCTGGGGTAATTCCAGATGAGATTTTCCAACAATGTTGGTCTCTGAGAGTGATTTCATTTGCCAACAACAACCTCACAGGTAAGATTCCTGATTCATTGAGCTCTTGCTACTCTTTGGCAGTTGTGAACTTTTCCTCTAATCAGATACATGGGGAACTTCCATCTGGAATGTGGTTTTTGAGGGGACTTCAATCAATTGATCTTTCAAACAACTTGCTGGAGGGGGAGATTGCAGAAGGAATTCAGAATCTGATTGATTTGAGGGAGTTGAGGCTGGGGAGGAACCTCTTCACTGGTAGGATTCCTGAGCATATTGGAGAGTGTTTGCTTTTGAAGTTGGTTGATTTCAGCAGCAATTCTCTCTCTGGGAGAGTTCCTGAGTCAATGCAAAAGCTCAGTTCATGCACATTTCTCAGCTTGCAAGGGAATTCATTCTCTGGTGGCATTCCACATTGGATTGGAGAAATGAAAAGTCTAGATACATTGGATCTTTCTGAAAACAGATTTTCTGGTTGGATTCCAAAGTCCATAGGAAATCTTGACTTGATGAGTAGGTTGAATCTTTCAAGGAATCAGATCACAGGAAACCTGCCAGAGTTGATGGTAAACTGCATTAAGCTTTTGACTCTTGACCTCAGCCACAATCACTTGGCAGGCCATCTTCCTTCATGGATATTTCGGATGGGTTTGCAAAGTATCTCTCTTTCTGGGAATGGCTTCAGTGATGGAAATTATCCCTCACTTTCTTCCGTTTCTGTATCTTTTCATGGCCTTCAGGTTTTGGATTTATCATCAAATGCATTTTTTGGCCAACTTCCATCTGGAATTGGAGGTCTTGGTAGCTTGCAAGTCTTGAATTTGTCCTCCAACAATATCTCAGGTTCTATTCCTGTGAGTTTAGGAGACCTTAAATCTTTGTACATTCTTGACTTAAGTGGCAACAAGCTCAATGGAAGCATTCCTTCTGCAATAGAAGGAGCAACATCACTCAGTGAAATGAGGCTACAAAAGAACTTCCTAGGTGGGAGAATTCCAGCCCAAATTGATAAGTGTTCAGAACTAACATTACTGAATTTATCTCACAACAAGCTTATTGGCTCAATTCCTTCATCCATAGCAAACCTAACCAATCTTCAGGATGTAGATTTCTCATGGAATGAACTCTCTGGAAGCTTACCAAAGGAGCTGACAAATCTCTCCAACCTGTTCTCCTTTAATGTTTCACACAACCACCTTCAAGGTGAGCTACCAGTGGGTGGTTTCTTCAACACCATTTCTCCTTCATCTGTCTCTGGTAATCCATTGTTATGTGGTTCTGTTGTTAACCACTCATGCCCTTCTGTTCATCCAAAGCCTATAGTGCTGAACCCCAATTCTTCATACTCCAGTTCTGGCTCTTCATTCCAAAACCATCACCATAAGATTATGCTAAGTATCTCTGTCCTCATTGCTATTGGTGCTGCTATTTTTATTGTCATTGGTGTGGTGGTTGTTACTGTTCTAAATATCCATGTGAGGTCTTCAATGCCTCTTTCTGCTACTCCGTTTATATTCTCTGGTGGTGAGGACTATAGCGGTTCACCCGGGAATGATCCAAACCATGGCAAGCTTGTGATGTTTAATGGTGATGCAGAATTTGCTGATGGTGCTCATAATCTTCTTAACAAAGACAGTGAAATAGGTCGCGGTGGATTTGGAGTTGTTTATTGCACTGTCCTCAGAGATGGTCATTGTGTTGCAATCAAGAAGCTTACATTATCCACCTTAACCAAGTCACAAGAAGACTTTGAGAGGGAAGTTAAAATGCTTGGGAAGATCAAGCATAAAAATATTGTGGCACTTGAAGGTTATTATTGGACTCAATCCTTGCAGCTCCTAATTTATGAGTACCTAGCCAGAGGGAGTTTGCAGAAGCTTCTTCATGATGATGATAGCAGCAAAAAGATACTTTCTTGGAGAAAAAGGTTCAAGATCATACTTGGAATTGCAAGAGGGTTGGCCTATTTGCATCAAATGGAGTTGATTCATTACAATTTAAAGTCAACAAATGTGTTCATAGATTGTTCTGATGAGGCAAAGATAGGAGATTTTGGGTTGGTGAGGCTTCTTCCAATGCTGGACCCTTGTGTTTTGAGCAGCAAAATTCAAAGTGCACTTGGCTACATGGCTCCTGAGTTTGCTTGCCGCACAGTGAAGATAACTGAGAAGTGTGACATATACAGTTTTGGAATTTTGATTTTGGAAGTGGTGACAGGAAAACGACCAGTGGAATACATGGAGGATGATGTGGTTGTTCTTTGTGACAAGGTGAGAAGTGCTTTGGATGATGGCAAAGTGGAGCAATGTGTTGATGAAAATCTAAAGGGTAATTTTGCTACAGAAGAAGCAGTTCCTGTGATAAAACTGGGATTGGTTTGTGCATCACAAGTTCCCTCAAAGAGACCAGATATGGCTGAAGTGATCAACATATTGGAGTTGATCCAATGCCCTTCTGAAGAACAAGAAGAAGAAGAAGAAGAAGAAGAAATACAATGA 2934 0.411 MKQVQFIPFLSLCFVFCCPFLVISVNPPFNDDVLGLIMFKAGLEDPKGKLSKWNEDDYSPCNWVGVKCDPVNNRVSSLVLDGFSLSGHIDRGLLGLQFLQILSLSRNNFTGTIAHDLLSIGDLQVVDLSENNLSGVIPDEIFQQCWSLRVISFANNNLTGKIPDSLSSCYSLAVVNFSSNQIHGELPSGMWFLRGLQSIDLSNNLLEGEIAEGIQNLIDLRELRLGRNLFTGRIPEHIGECLLLKLVDFSSNSLSGRVPESMQKLSSCTFLSLQGNSFSGGIPHWIGEMKSLDTLDLSENRFSGWIPKSIGNLDLMSRLNLSRNQITGNLPELMVNCIKLLTLDLSHNHLAGHLPSWIFRMGLQSISLSGNGFSDGNYPSLSSVSVSFHGLQVLDLSSNAFFGQLPSGIGGLGSLQVLNLSSNNISGSIPVSLGDLKSLYILDLSGNKLNGSIPSAIEGATSLSEMRLQKNFLGGRIPAQIDKCSELTLLNLSHNKLIGSIPSSIANLTNLQDVDFSWNELSGSLPKELTNLSNLFSFNVSHNHLQGELPVGGFFNTISPSSVSGNPLLCGSVVNHSCPSVHPKPIVLNPNSSYSSSGSSFQNHHHKIMLSISVLIAIGAAIFIVIGVVVVTVLNIHVRSSMPLSATPFIFSGGEDYSGSPGNDPNHGKLVMFNGDAEFADGAHNLLNKDSEIGRGGFGVVYCTVLRDGHCVAIKKLTLSTLTKSQEDFEREVKMLGKIKHKNIVALEGYYWTQSLQLLIYEYLARGSLQKLLHDDDSSKKILSWRKRFKIILGIARGLAYLHQMELIHYNLKSTNVFIDCSDEAKIGDFGLVRLLPMLDPCVLSSKIQSALGYMAPEFACRTVKITEKCDIYSFGILILEVVTGKRPVEYMEDDVVVLCDKVRSALDDGKVEQCVDENLKGNFATEEAVPVIKLGLVCASQVPSKRPDMAEVINILELIQCPSEEQEEEEEEEEIQ 977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01460 977 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 681 763 - -
Viun10g01460 977 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 764 966 - -
Viun10g01460 977 Pfam Leucine Rich Repeat 487 508 IPR001611 GO:0005515
Viun10g01460 977 Gene3D Ribonuclease Inhibitor 30 188 IPR032675 -
Viun10g01460 977 SUPERFAMILY L domain-like 51 308 - -
Viun10g01460 977 Coils Coil 964 977 - -
Viun10g01460 977 SUPERFAMILY Protein kinase-like (PK-like) 688 961 IPR011009 -
Viun10g01460 977 Gene3D Phosphorylase Kinase; domain 1 677 763 - -
Viun10g01460 977 ProSitePatterns Protein kinases ATP-binding region signature. 693 716 IPR017441 GO:0005524
Viun10g01460 977 SMART LRR_sd22_2 193 216 - -
Viun10g01460 977 SMART LRR_sd22_2 508 534 - -
Viun10g01460 977 SMART LRR_sd22_2 436 462 - -
Viun10g01460 977 SMART LRR_sd22_2 289 315 - -
Viun10g01460 977 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 30 308 - -
Viun10g01460 977 Gene3D Transferase(Phosphotransferase) domain 1 764 977 - -
Viun10g01460 977 Gene3D Ribonuclease Inhibitor 189 284 IPR032675 -
Viun10g01460 977 PRINTS Leucine-rich repeat signature 123 136 - -
Viun10g01460 977 PRINTS Leucine-rich repeat signature 436 449 - -
Viun10g01460 977 PANTHER OS05G0588300 PROTEIN 147 265 - -
Viun10g01460 977 ProSiteProfiles Protein kinase domain profile. 687 960 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g01460 977 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 309 582 - -
Viun10g01460 977 Pfam Leucine rich repeat 390 449 IPR001611 GO:0005515
Viun10g01460 977 Pfam Leucine rich repeat 123 182 IPR001611 GO:0005515
Viun10g01460 977 ProSiteProfiles Leucine-rich repeat profile. 414 437 IPR001611 GO:0005515
Viun10g01460 977 SUPERFAMILY RNI-like 248 556 - -
Viun10g01460 977 CDD STKc_IRAK 693 960 - -
Viun10g01460 977 Gene3D Ribonuclease Inhibitor 291 581 IPR032675 -
Viun10g01460 977 Pfam Leucine rich repeat N-terminal domain 30 69 IPR013210 -
Viun10g01460 977 SMART LRR_typ_2 388 411 IPR003591 -
Viun10g01460 977 SMART LRR_typ_2 508 531 IPR003591 -
Viun10g01460 977 SMART LRR_typ_2 337 361 IPR003591 -
Viun10g01460 977 SMART LRR_typ_2 120 144 IPR003591 -
Viun10g01460 977 SMART LRR_typ_2 532 556 IPR003591 -
Viun10g01460 977 SMART LRR_typ_2 412 435 IPR003591 -
Viun10g01460 977 SMART LRR_typ_2 193 216 IPR003591 -
Viun10g01460 977 SMART LRR_typ_2 217 241 IPR003591 -
Viun10g01460 977 SMART LRR_typ_2 436 460 IPR003591 -
Viun10g01460 977 SMART LRR_typ_2 289 313 IPR003591 -
Viun10g01460 977 Pfam Protein kinase domain 688 954 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01460 Viun-Chr10 29020009 29024217 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01460 22 969 Receptor kinase-like Gene Family AT3G56370 59.811 0.0 1098
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Viun10g01460 Pkinase 2.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01460 - - gmx:100791204 1695.63