Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01454 ATGGAGTCAAGGAGCTGCATGAACGTGGCGTGCGCCACCTTGACGACGATTCGGTGGCGCAAAGGCTGGGCCCTGCGATCCGGCGAATTCGCCGATCTCTGTGATAAGTGCGGTACTGCTTATGAGCAATCAACATATTGTGATACTTTCCATTCAAACGATTCTGGTTGGAGAGAATGCACCTCATGTGACAAGCGTCTCCATTGTGGATGCATTGCTTCTATGTCTCAGCTTGAATTATTAGATACTGGTGGTGTAAGCTGTATAAGCTGTGCAAGGAATTCAGGACTTCAACCTATTGCAATCAATGAAAAGCCTAATGGTTCCGGGACTTCAAAGGTAATAGATGTCAGTGCGCAGCAGTGCACTTCTCTGGCTAACCAATTAAACTTGAGGGGTATGCAAGGAGGGCATTATGCAGAGAATGGTGGTCTCCGATGCTGGTTCAAGCCTCATAAAGTTGAAACAGATGGGCCTTCTACAGAAATGAAACCAGAAATTTTGCCTTCTGTTGGAGAACTTGGAAGCACTTTGATATCACAATTTCATTTTGAGTCTAATGGATCATCCAAGGCTTCCAAAGCAGAGAATTGTAAGGCAGACACAGAAATACGAGATATATATGAATCTTTGGCACAAACTAATTTAAGTATGACCCTTGCTACTCCCTTAGGAAATTCAAACCCCTTTCATAGTTCTGTTGTTGATGAAAGGGAACAAAGTAAAACATCTTCACTTTTATTGGGATCAAGGTCACGCCATCTTTTACCTAAGCCCCCTAGGTCAACCAGTGGCACAGGCCTAGAAGTAAATGCTGGTATGGTATCCCAGATTCGTGTGGCAAGGCCACCCGCTGAAGGTCGGGGAAGGAATCAGTTGCTTCCGCGTTATTGGCCCAGAATTACTGATCAAGAGTTGCAACAAATATCAGGAGATTCAAATTCCACTATCGTGCCACTCTTCGAAAAGATGCTGAGTGCAAGTGATGCTGGACGAATTGGTCGCCTGGTTTTACCAAAAGCATGTGCTGAAGCATATTTCCCTCAAATTTCTCAACCAGAGGGCCTTCCTTTACGAATCCAAGATGTGAAAGGAAAAGAATGGATGTTTCAATTTAGATTTTGGCCAAATAATAACAGCAGGATGTATGTTTTAGAAGGTGTAACCCCCTGCATTCAGTCTATGCAATTGCAAGCTGGAGATACTGTAACATTTAGCCGTATGGACCCTGAGGGGAAACTTATAATGGGGTTTAGAAAGGCAACAAATTCTACAGCAGTACAGTCACAAAAGGGATGTTCAGAAACCCACCTAAATGTGCTGTCTAAAAAATGGAACTCGGCTGGTGGTGACATGAACTGGCATAACATTGACATTCCCGAAAGCAGGAAAAGAGAGGGATTGCCTTTGCCTCCTGTGCTGGTTCCTGAGAAGAAAAGAACTCGGAATATTGGGTCAAAAAGTAAGAGGTTGCTTATTGATAGCCAGGATGCACTGGAGCTGAAACTTACTTGGGAAGAGGCTCAGGATTTGCTCCGACCACCTCCTGCGGTTAAGCCAAGCATTGTCATGATTGAGGATCAGGTTTTTGAAGAGTATGAAGAACCTCCTGTCTTTGGAAAGAGGAGTATATTCGTAGTTCGATCAGCTGGGGTGAATGAGCAGTGGACGCAGTGTGATAGTTGCTCAAAATGGCGGAAGTTACCAGTTGATGTACTAATTCCCCCTAAATGGACATGTGTGGAGAATTTATGGGATCAGAGCAGGTGTTCGTGTGCTGCTCCCAATGAATTGAACCCAAGGGAACTGGATAATCTTCTGAGGTTGAATAAAGAATTCAAGAAACAAAGATTGGCAGCAAGCCAGAGACCAGCCCTGGACCATGAATCTTCAGGACTGGATGCTTTGGCAAATGCAGCAATACTTGGAGATGATGCAAGTGACTCTGGCAGGACACCAGTCGTCACCACCACAAAACATCCCCGGCATAGACCTGGGTGTTCTTGCATTGTCTGTATCCAGCCACCAAGTGGAAAAGGCAAACACAAACCTACTTGCACCTGCAATGTGTGCATGACAGTTAAACGTCGGTTTAAAACCCTGATGATGAGAAAGAAGAAGCGTCAATCGGAACGTGAAGCTGAGATTGCTCAGAGAAATCAGTTAGCATGGCGGACCAAGGAGGAATCAGAAGTTGACAGCACCTCACGACATTTAACTCCAGTTGATGGTTTGGAGAATGAAGTAAGGGCGCCAAGTGAGTTGGAGCCAAGGACTCAAGACCAAGTTGCTGAAGCTGCCAAGGGACAATTAGATTTGAATTGCCAACCTGATCGAGAAGAAGCGCAAACCGGGCCAAATAATGTGAGCATGACAAGTCTTCTTGAAGAAGCAAATCTCCCGCTGGAGACCTACCTGAAGCAAAATGGCCTTACTAGTTTGATATCAGAACAGCAAACAAATTCAGCTTCAAATGTGCAGGCACAGACAACCAACGATAATGAGGGAAGACAAAACGAGGATAGCGGTACGGCTTCAGTTATTCATGAACAGGATAGCAGTCATGAAGAGAACAGTGGGCAAGATAAAGACCAAAACAATTCACTCTCATGA 2613 0.4485 MESRSCMNVACATLTTIRWRKGWALRSGEFADLCDKCGTAYEQSTYCDTFHSNDSGWRECTSCDKRLHCGCIASMSQLELLDTGGVSCISCARNSGLQPIAINEKPNGSGTSKVIDVSAQQCTSLANQLNLRGMQGGHYAENGGLRCWFKPHKVETDGPSTEMKPEILPSVGELGSTLISQFHFESNGSSKASKAENCKADTEIRDIYESLAQTNLSMTLATPLGNSNPFHSSVVDEREQSKTSSLLLGSRSRHLLPKPPRSTSGTGLEVNAGMVSQIRVARPPAEGRGRNQLLPRYWPRITDQELQQISGDSNSTIVPLFEKMLSASDAGRIGRLVLPKACAEAYFPQISQPEGLPLRIQDVKGKEWMFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMDPEGKLIMGFRKATNSTAVQSQKGCSETHLNVLSKKWNSAGGDMNWHNIDIPESRKREGLPLPPVLVPEKKRTRNIGSKSKRLLIDSQDALELKLTWEEAQDLLRPPPAVKPSIVMIEDQVFEEYEEPPVFGKRSIFVVRSAGVNEQWTQCDSCSKWRKLPVDVLIPPKWTCVENLWDQSRCSCAAPNELNPRELDNLLRLNKEFKKQRLAASQRPALDHESSGLDALANAAILGDDASDSGRTPVVTTTKHPRHRPGCSCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMMRKKKRQSEREAEIAQRNQLAWRTKEESEVDSTSRHLTPVDGLENEVRAPSELEPRTQDQVAEAAKGQLDLNCQPDREEAQTGPNNVSMTSLLEEANLPLETYLKQNGLTSLISEQQTNSASNVQAQTTNDNEGRQNEDSGTASVIHEQDSSHEENSGQDKDQNNSLS 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01454 870 SMART B3_2 321 421 IPR003340 GO:0003677
Viun10g01454 870 SUPERFAMILY DNA-binding pseudobarrel domain 318 421 IPR015300 -
Viun10g01454 870 ProSiteProfiles Zinc finger CW-type profile. 550 600 IPR011124 GO:0008270
Viun10g01454 870 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 3 822 - -
Viun10g01454 870 MobiDBLite consensus disorder prediction 818 849 - -
Viun10g01454 870 MobiDBLite consensus disorder prediction 231 268 - -
Viun10g01454 870 Pfam CW-type Zinc Finger 555 597 IPR011124 GO:0008270
Viun10g01454 870 CDD B3_DNA 319 420 IPR003340 GO:0003677
Viun10g01454 870 Gene3D - 299 426 IPR015300 -
Viun10g01454 870 Gene3D - 553 609 - -
Viun10g01454 870 ProSiteProfiles B3 DNA-binding domain profile. 321 422 IPR003340 GO:0003677
Viun10g01454 870 FunFam B3 domain-containing transcription repressor VAL1 299 426 - -
Viun10g01454 870 MobiDBLite consensus disorder prediction 726 746 - -
Viun10g01454 870 Pfam B3 DNA binding domain 321 420 IPR003340 GO:0003677
Viun10g01454 870 MobiDBLite consensus disorder prediction 231 250 - -
Viun10g01454 870 MobiDBLite consensus disorder prediction 818 870 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01454 Viun-Chr10 28856046 28863413 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01454 1 821 B3 DNA Binding Superfamily AT4G32010 52.899 0.0 822
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Viun10g01454 B3 7.5e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01454 K09287 - gmx:100778833 1599.72