Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01453 ATGGAGTCAAGGAGCTGCATGAACGTGGCGTGCGCCACCTTGACGACGATTCGGTGGCGCAAAGGCTGGGCCCTGCGATCCGGCGAATTCGCCGATCTCTGTGATAAGTGCGGTACTGCTTATGAGCAATCAACATATTGTGATACTTTCCATTCAAACGATTCTGGTTGGAGAGAATGCACCTCATGTGACAAGCGTCTCCATTGTGGATGCATTGCTTCTATGTCTCAGCTTGAATTATTAGATACTGGTGGTGTAAGCTGTATAAGCTGTGCAAGGAATTCAGGACTTCAACCTATTGCAATCAATGAAAAGCCTAATGGTTCCGGGACTTCAAAGGTAATAGATGTCAGTGCGCAGCAGTGCACTTCTCTGGCTAACCAATTAAACTTGAGGGGTATGCAAGGAGGGCATTATGCAGAGAATGGTGGTCTCCGATGCTGGTTCAAGCCTCATAAAGTTGAAACAGATGGGCCTTCTACAGAAATGAAACCAGAAATTTTGCCTTCTGTTGGAGAACTTGGAAGCACTTTGATATCACAATTTCATTTTGAGTCTAATGGATCATCCAAGGCTTCCAAAGCAGAGAATTGTAAGGCAGACACAGAAATACGAGATATATATGAATCTTTGGCACAAACTAATTTAAGTATGACCCTTGCTACTCCCTTAGGAAATTCAAACCCCTTTCATAGTTCTGTTGTTGATGAAAGGGAACAAAGTAAAACATCTTCACTTTTATTGGGATCAAGGTCACGCCATCTTTTACCTAAGCCCCCTAGGTCAACCAGTGGCACAGGCCTAGAAGTAAATGCTGGTATGGTATCCCAGATTCGTGTGGCAAGGCCACCCGCTGAAGGTCGGGGAAGGAATCAGTTGCTTCCGCGTTATTGGCCCAGAATTACTGATCAAGAGTTGCAACAAATATCAGGAGATTCAAATTCCACTATCGTGCCACTCTTCGAAAAGATGCTGAGTGCAAGTGATGCTGGACGAATTGGTCGCCTGGTTTTACCAAAAGCATGTGCTGAAGCATATTTCCCTCAAATTTCTCAACCAGAGGGCCTTCCTTTACGAATCCAAGATGTGAAAGGAAAAGAATGGATGTTTCAATTTAGATTTTGGCCAAATAATAACAGCAGGATGTATGTTTTAGAAGGTGTAACCCCCTGCATTCAGTCTATGCAATTGCAAGCTGGAGATACTGTAACATTTAGCCGTATGGACCCTGAGGGGAAACTTATAATGGGGTTTAGAAAGGCAACAAATTCTACAGCAGTACAGGAAACACTACCATCTAATATGCCCAATGGGTCTCATTCAAGTGAAACTTCCTATTCTGGTGTTTATGAGAATCTACCTATATTAAGTGGTTACTCTGGCCTTCTTCAGTCACAAAAGGGATGTTCAGAAACCCACCTAAATGTGCTGTCTAAAAAATGGAACTCGGCTGGTGGTGACATGAACTGGCATAACATTGACATTCCCGAAAGCAGGAAAAGAGAGGGATTGCCTTTGCCTCCTGTGCTGGTTCCTGAGAAGAAAAGAACTCGGAATATTGGGTCAAAAAGTAAGAGGTTGCTTATTGATAGCCAGGATGCACTGGAGCTGAAACTTACTTGGGAAGAGGCTCAGGATTTGCTCCGACCACCTCCTGCGGTTAAGCCAAGCATTGTCATGATTGAGGATCAGGTTTTTGAAGAGTATGAAGAACCTCCTGTCTTTGGAAAGAGGAGTATATTCGTAGTTCGATCAGCTGGGGTGAATGAGCAGTGGACGCAGTGTGATAGTTGCTCAAAATGGCGGAAGTTACCAGTTGATGTACTAATTCCCCCTAAATGGACATGTGTGGAGAATTTATGGGATCAGAGCAGGTGTTCGTGTGCTGCTCCCAATGAATTGAACCCAAGGGAACTGGATAATCTTCTGAGGTTGAATAAAGAATTCAAGAAACAAAGATTGGCAGCAAGCCAGAGACCAGCCCTGGACCATGAATCTTCAGGACTGGATGCTTTGGCAAATGCAGCAATACTTGGAGATGATGCAAGTGACTCTGGCAGGACACCAGTCGTCACCACCACAAAACATCCCCGGCATAGACCTGGGTGTTCTTGCATTGTCTGTATCCAGCCACCAAGTGGAAAAGGCAAACACAAACCTACTTGCACCTGCAATGTGTGCATGACAGTTAAACGTCGGTTTAAAACCCTGATGATGAGAAAGAAGAAGCGTCAATCGGAACGTGAAGCTGAGATTGCTCAGAGAAATCAGTTAGCATGGCGGACCAAGGAGGAATCAGAAGTTGACAGCACCTCACGACATTTAACTCCAGTTGATGGTTTGGAGAATGAAGTAAGGGCGCCAAGTGAGTTGGAGCCAAGGACTCAAGACCAAGTTGCTGAAGCTGCCAAGGGACAATTAGATTTGAATTGCCAACCTGATCGAGAAGAAGCGCAAACCGGGCCAAATAATGTGAGCATGACAAGTCTTCTTGAAGAAGCAAATCTCCCGCTGGAGACCTACCTGAAGCAAAATGGCCTTACTAGTTTGATATCAGAACAGCAAACAAATTCAGCTTCAAATGTGCAGGCACAGACAACCAACGATAATGAGGGAAGACAAAACGAGGATAGCGGTACGGCTTCAGTTATTCATGAACAGGATAGCAGTCATGAAGAGAACAGTGGGCAAGATAAAGACCAAAACAATTCACTCTCATGA 2721 0.4462 MESRSCMNVACATLTTIRWRKGWALRSGEFADLCDKCGTAYEQSTYCDTFHSNDSGWRECTSCDKRLHCGCIASMSQLELLDTGGVSCISCARNSGLQPIAINEKPNGSGTSKVIDVSAQQCTSLANQLNLRGMQGGHYAENGGLRCWFKPHKVETDGPSTEMKPEILPSVGELGSTLISQFHFESNGSSKASKAENCKADTEIRDIYESLAQTNLSMTLATPLGNSNPFHSSVVDEREQSKTSSLLLGSRSRHLLPKPPRSTSGTGLEVNAGMVSQIRVARPPAEGRGRNQLLPRYWPRITDQELQQISGDSNSTIVPLFEKMLSASDAGRIGRLVLPKACAEAYFPQISQPEGLPLRIQDVKGKEWMFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMDPEGKLIMGFRKATNSTAVQETLPSNMPNGSHSSETSYSGVYENLPILSGYSGLLQSQKGCSETHLNVLSKKWNSAGGDMNWHNIDIPESRKREGLPLPPVLVPEKKRTRNIGSKSKRLLIDSQDALELKLTWEEAQDLLRPPPAVKPSIVMIEDQVFEEYEEPPVFGKRSIFVVRSAGVNEQWTQCDSCSKWRKLPVDVLIPPKWTCVENLWDQSRCSCAAPNELNPRELDNLLRLNKEFKKQRLAASQRPALDHESSGLDALANAAILGDDASDSGRTPVVTTTKHPRHRPGCSCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMMRKKKRQSEREAEIAQRNQLAWRTKEESEVDSTSRHLTPVDGLENEVRAPSELEPRTQDQVAEAAKGQLDLNCQPDREEAQTGPNNVSMTSLLEEANLPLETYLKQNGLTSLISEQQTNSASNVQAQTTNDNEGRQNEDSGTASVIHEQDSSHEENSGQDKDQNNSLS 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01453 906 SMART B3_2 321 421 IPR003340 GO:0003677
Viun10g01453 906 FunFam B3 domain-containing transcription repressor VAL1 299 426 - -
Viun10g01453 906 MobiDBLite consensus disorder prediction 854 885 - -
Viun10g01453 906 Pfam B3 DNA binding domain 321 420 IPR003340 GO:0003677
Viun10g01453 906 Gene3D - 299 426 IPR015300 -
Viun10g01453 906 SUPERFAMILY DNA-binding pseudobarrel domain 318 421 IPR015300 -
Viun10g01453 906 MobiDBLite consensus disorder prediction 231 268 - -
Viun10g01453 906 CDD B3_DNA 319 420 IPR003340 GO:0003677
Viun10g01453 906 Pfam CW-type Zinc Finger 591 633 IPR011124 GO:0008270
Viun10g01453 906 ProSiteProfiles Zinc finger CW-type profile. 586 636 IPR011124 GO:0008270
Viun10g01453 906 MobiDBLite consensus disorder prediction 854 906 - -
Viun10g01453 906 ProSiteProfiles B3 DNA-binding domain profile. 321 422 IPR003340 GO:0003677
Viun10g01453 906 Gene3D - 589 645 - -
Viun10g01453 906 MobiDBLite consensus disorder prediction 231 250 - -
Viun10g01453 906 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 3 858 - -
Viun10g01453 906 MobiDBLite consensus disorder prediction 762 782 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01453 Viun-Chr10 28856046 28863414 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01453 1 857 B3 DNA Binding Superfamily AT4G32010 50.694 0.0 805
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Viun10g01453 B3 7.9e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01453 K09287 - gmx:100778833 1689.86