Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01452 ATGGAGTCAAGGAGCTGCATGAACGTGGCGTGCGCCACCTTGACGACGATTCGGTGGCGCAAAGGCTGGGCCCTGCGATCCGGCGAATTCGCCGATCTCTGTGATAAGTGCGGTACTGCTTATGAGCAATCAACATATTGTGATACTTTCCATTCAAACGATTCTGGTTGGAGAGAATGCACCTCATGTGACAAGCGTCTCCATTGTGGATGCATTGCTTCTATGTCTCAGCTTGAATTATTAGATACTGGTGGTGTAAGCTGTATAAGCTGTGCAAGGAATTCAGGACTTCAACCTATTGCAATCAATGAAAAGCCTAATGGTTCCGGGACTTCAAAGGTAATAGATGTCAGTGCGCAGCAGTGCACTTCTCTGGCTAACCAATTAAACTTGAGGGGTATGCAAGGAGGGCATTATGCAGAGAATGGTGGTCTCCGATGCTGGTTCAAGCCTCATAAAGTTGAAACAGATGGGCCTTCTACAGAAATGAAACCAGAAATTTTGCCTTCTGTTGGAGAACTTGGAAGCACTTTGATATCACAATTTCATTTTGAGTCTAATGGATCATCCAAGGCTTCCAAAGCAGAGAATTGTAAGGCAGACACAGAAATACGAGATATATATGAATCTTTGGCACAAACTAATTTAAGTATGACCCTTGCTACTCCCTTAGGAAATTCAAACCCCTTTCATAGTTCTGTTGTTGATGAAAGGGAACAAAGTAAAACATCTTCACTTTTATTGGGATCAAGGTCACGCCATCTTTTACCTAAGCCCCCTAGGTCAACCAGTGGCACAGGCCTAGAAGTAAATGCTGGTATGGTATCCCAGATTCGTGTGGCAAGGCCACCCGCTGAAGGTCGGGGAAGGAATCAGTTGCTTCCGCGTTATTGGCCCAGAATTACTGATCAAGAGTTGCAACAAATATCAGGAGATTCAAATTCCACTATCGTGCCACTCTTCGAAAAGATGCTGAGTGCAAGTGATGCTGGACGAATTGGTCGCCTGGTTTTACCAAAAGCATGTGCTGAAGCATATTTCCCTCAAATTTCTCAACCAGAGGGCCTTCCTTTACGAATCCAAGATGTGAAAGGAAAAGAATGGATGTTTCAATTTAGATTTTGGCCAAATAATAACAGCAGGATGTATGTTTTAGAAGGTGTAACCCCCTGCATTCAGTCTATGCAATTGCAAGCTGGAGATACTGTAACATTTAGCCGTATGGACCCTGAGGGGAAACTTATAATGGGGTTTAGAAAGGCAACAAATTCTACAGCAGTACAGTCACAAAAGGGATGTTCAGAAACCCACCTAAATGTGCTGTCTAAAAAATGGAACTCGGCTGGTGGTGACATGAACTGGCATAACATTGACATTCCCGAAAGCAGGAAAAGAGAGGGATTGCCTTTGCCTCCTGTGCTGGTTCCTGAGAAGAAAAGAACTCGGAATATTGGGTCAAAAAGTAAGAGGTTGCTTATTGATAGCCAGGATGCACTGGAGCTGAAACTTACTTGGGAAGAGGCTCAGGATTTGCTCCGACCACCTCCTGCGGTTAAGCCAAGCATTGTCATGATTGAGGATCAGGTTTTTGAAGAGTATGAAGAACCTCCTGTCTTTGGAAAGAGGAGTATATTCGTAGTTCGATCAGCTGGTATTTCAATTCGGAGTGTGATTGAACTTAGGGTGAATGAGCAGTGGACGCAGTGTGATAGTTGCTCAAAATGGCGGAAGTTACCAGTTGATGTACTAATTCCCCCTAAATGGACATGTGTGGAGAATTTATGGGATCAGAGCAGGTGTTCGTGTGCTGCTCCCAATGAATTGAACCCAAGGGAACTGGATAATCTTCTGAGGTTGAATAAAGAATTCAAGAAACAAAGATTGGCAGCAAGCCAGAGACCAGCCCTGGACCATGAATCTTCAGGACTGGATGCTTTGGCAAATGCAGCAATACTTGGAGATGATGCAAGTGACTCTGGCAGGACACCAGTCGTCACCACCACAAAACATCCCCGGCATAGACCTGGGTGTTCTTGCATTGTCTGTATCCAGCCACCAAGTGGAAAAGGCAAACACAAACCTACTTGCACCTGCAATGTGTGCATGACAGTTAAACGTCGGTTTAAAACCCTGATGATGAGAAAGAAGAAGCGTCAATCGGAACGTGAAGCTGAGATTGCTCAGAGAAATCAGTTAGCATGGCGGACCAAGGAGGAATCAGAAGTTGACAGCACCTCACGACATTTAACTCCAGTTGATGGTTTGGAGAATGAAGTAAGGGCGCCAAGTGAGTTGGAGCCAAGGACTCAAGACCAAGTTGCTGAAGCTGCCAAGGGACAATTAGATTTGAATTGCCAACCTGATCGAGAAGAAGCGCAAACCGGGCCAAATAATGTGAGCATGACAAGTCTTCTTGAAGAAGCAAATCTCCCGCTGGAGACCTACCTGAAGCAAAATGGCCTTACTAGTTTGATATCAGAACAGCAAACAAATTCAGCTTCAAATGTGCAGGCACAGACAACCAACGATAATGAGGGAAGACAAAACGAGGATAGCGGTACGGCTTCAGTTATTCATGAACAGGATAGCAGTCATGAAGAGAACAGTGGGCAAGATAAAGACCAAAACAATTCACTCTCATGA 2643 0.4472 MESRSCMNVACATLTTIRWRKGWALRSGEFADLCDKCGTAYEQSTYCDTFHSNDSGWRECTSCDKRLHCGCIASMSQLELLDTGGVSCISCARNSGLQPIAINEKPNGSGTSKVIDVSAQQCTSLANQLNLRGMQGGHYAENGGLRCWFKPHKVETDGPSTEMKPEILPSVGELGSTLISQFHFESNGSSKASKAENCKADTEIRDIYESLAQTNLSMTLATPLGNSNPFHSSVVDEREQSKTSSLLLGSRSRHLLPKPPRSTSGTGLEVNAGMVSQIRVARPPAEGRGRNQLLPRYWPRITDQELQQISGDSNSTIVPLFEKMLSASDAGRIGRLVLPKACAEAYFPQISQPEGLPLRIQDVKGKEWMFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMDPEGKLIMGFRKATNSTAVQSQKGCSETHLNVLSKKWNSAGGDMNWHNIDIPESRKREGLPLPPVLVPEKKRTRNIGSKSKRLLIDSQDALELKLTWEEAQDLLRPPPAVKPSIVMIEDQVFEEYEEPPVFGKRSIFVVRSAGISIRSVIELRVNEQWTQCDSCSKWRKLPVDVLIPPKWTCVENLWDQSRCSCAAPNELNPRELDNLLRLNKEFKKQRLAASQRPALDHESSGLDALANAAILGDDASDSGRTPVVTTTKHPRHRPGCSCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMMRKKKRQSEREAEIAQRNQLAWRTKEESEVDSTSRHLTPVDGLENEVRAPSELEPRTQDQVAEAAKGQLDLNCQPDREEAQTGPNNVSMTSLLEEANLPLETYLKQNGLTSLISEQQTNSASNVQAQTTNDNEGRQNEDSGTASVIHEQDSSHEENSGQDKDQNNSLS 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01452 880 SMART B3_2 321 421 IPR003340 GO:0003677
Viun10g01452 880 FunFam B3 domain-containing transcription repressor VAL1 299 426 - -
Viun10g01452 880 SUPERFAMILY DNA-binding pseudobarrel domain 318 421 IPR015300 -
Viun10g01452 880 Gene3D - 299 426 IPR015300 -
Viun10g01452 880 MobiDBLite consensus disorder prediction 231 268 - -
Viun10g01452 880 ProSiteProfiles Zinc finger CW-type profile. 560 610 IPR011124 GO:0008270
Viun10g01452 880 MobiDBLite consensus disorder prediction 828 880 - -
Viun10g01452 880 CDD B3_DNA 319 420 IPR003340 GO:0003677
Viun10g01452 880 Pfam CW-type Zinc Finger 565 607 IPR011124 GO:0008270
Viun10g01452 880 Gene3D - 563 619 - -
Viun10g01452 880 Pfam B3 DNA binding domain 321 420 IPR003340 GO:0003677
Viun10g01452 880 ProSiteProfiles B3 DNA-binding domain profile. 321 422 IPR003340 GO:0003677
Viun10g01452 880 MobiDBLite consensus disorder prediction 828 859 - -
Viun10g01452 880 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 3 832 - -
Viun10g01452 880 MobiDBLite consensus disorder prediction 231 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01452 Viun-Chr10 28856046 28863414 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01452 1 831 B3 DNA Binding Superfamily AT4G32010 52.267 0.0 815
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Viun10g01452 B3 7.6e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01452 K09287 - gmx:100778833 1591.63