Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01435 ATGAGTTGCAGAGAAAGGAAGAAAGGGGAAAGAGAAGAGAAGGAATATGAGAACAGTTCTGTTGGATTGAAATCAAAATCAGTGAGGCAAAGCATTGGTTCAATAGAAGATGAACCGCTAACAATTGATGAAAGTCTTCTGATTGACCCCAAGCTATTGTTTATTGGGTCAAAAATTGGCGAGGGAGCTCATGGGAGAGTTTATGAAGGAAGGTACAGAGAACGGATTGTTGCTATCAAAGTTCTGCATCGTGGGAGCACTTTAGAAGAAAGAGTTTCATTGGAGAATCGTTTTGCTCGGGAAGTTAATATGATGTCTCGTGTCCACCATGAGAATCTTGTTAAGTTTATTGGAGCTTGTAAAGATCCTCTGATGGTGATTGTTACAGAGATGTTACCTGGGTTGTCACTGCGAAGATATCTGATCGCCATACGCCCTAAACAATTAGAGCTTTATGTGGCTATAAAGTTTGCTCTTGATATTGCTCTGGCCATGGATTGGTTACATGCCAATGGAATCATACATAGAGATCTGAAGCCTGACAATCTGCTGCTCACGGAAAACCAGAAGTCAGTTAAACTTGCTGATTTTGGCTTGGCAAGAGAAGAATCTGTGACTGAAATGATGACTGCAGAAACTGGAACTTACCGTTGGATGGCGCCTGAGTTGTACAGTACAGTGACATTGCGTCAAGGGGAGAAAAAGCATTACAACAATAAGGTTGATGTCTACAGCTTTGGAATTGTTTTGTGGGAGCTACTAACAAATCGCATGCCTTTTGAAGGAATGTCCAATTTACAGGCTGCTTATGCTGCTGCATTTAAGCAAGAGAGGCCTAACCTTCCTGAAGACATATCTCCTGATCTTGCCTTCGTAATTCAATCATGCTGGGTTGAAGATCCTAACATGAGACCAAGCTTCAGTCAGATTATCCGGATGCTCAATAAGTTCATCCTCACTCTCCAACCACCACCATTTTCAGCACAAGCACAACCTGAAGTGGACGACGAACCCGAGGCCGTGACAAGTAATGGCACCATAACTGACTTTTCTACGCGAAATAAAGTTAAGTTTTCTTTTATTCGCCACCTTTTTTCTTCAAAGAGAACCAAAAGCTGA 1119 0.42 MSCRERKKGEREEKEYENSSVGLKSKSVRQSIGSIEDEPLTIDESLLIDPKLLFIGSKIGEGAHGRVYEGRYRERIVAIKVLHRGSTLEERVSLENRFAREVNMMSRVHHENLVKFIGACKDPLMVIVTEMLPGLSLRRYLIAIRPKQLELYVAIKFALDIALAMDWLHANGIIHRDLKPDNLLLTENQKSVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNNKVDVYSFGIVLWELLTNRMPFEGMSNLQAAYAAAFKQERPNLPEDISPDLAFVIQSCWVEDPNMRPSFSQIIRMLNKFILTLQPPPFSAQAQPEVDDEPEAVTSNGTITDFSTRNKVKFSFIRHLFSSKRTKS 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01435 372 ProSitePatterns Protein kinases ATP-binding region signature. 59 80 IPR017441 GO:0005524
Viun10g01435 372 Pfam Protein tyrosine and serine/threonine kinase 55 314 IPR001245 GO:0004672|GO:0006468
Viun10g01435 372 Gene3D Phosphorylase Kinase; domain 1 42 132 - -
Viun10g01435 372 MobiDBLite consensus disorder prediction 1 20 - -
Viun10g01435 372 Gene3D Transferase(Phosphotransferase) domain 1 137 344 - -
Viun10g01435 372 FunFam Kinase suppressor of Ras 1 42 132 - -
Viun10g01435 372 ProSiteProfiles Protein kinase domain profile. 53 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g01435 372 SMART serkin_6 53 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g01435 372 SUPERFAMILY Protein kinase-like (PK-like) 48 336 IPR011009 -
Viun10g01435 372 MobiDBLite consensus disorder prediction 1 24 - -
Viun10g01435 372 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Viun10g01435 372 CDD STKc_MAP3K-like 59 314 - -
Viun10g01435 372 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 48 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01435 Viun-Chr10 28710320 28715594 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01435 41 369 MAP Kinase Kinase Kinase AT5G01850 72.238 9.02e-180 501
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Viun10g01435 PK_Tyr_Ser-Thr 7.5e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01435 - - gmx:100816708 635.18