Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01433 ATGGAGAGTGGATTGAAGGGCGAGGTTGAGATATCACCAAGTTGTCCAAGGTGTGGTTCTTCCAACACCAAGTTCTGCTACTACAATAACTATAGCTTAACTCAACCGAGGTACTTTTGCAAAGGTTGCAGAAGATACTGGACCAAAGGAAGGTCTCTGCGAAATGTTCATGTTGGTGGTAGCTACAAGAAGAACAGAAGAGCTTCTGGTTCCTCCTCAATGGTTAGTGATGGTCCAAATATTGATCTTGCACTAGTTTATGCAAATTTCCTGAACCAAAAACCCAGTTCTGAATTTGGGATTGAGAGTAATAACCCAGATCAAGTTCCAACAGCTTTTGATCCTTCTCTTGAGAATAATTCAAGGCTATCAAACACAAATGTTACTGGTGTTTGA 396 0.4091 MESGLKGEVEISPSCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGRSLRNVHVGGSYKKNRRASGSSSMVSDGPNIDLALVYANFLNQKPSSEFGIESNNPDQVPTAFDPSLENNSRLSNTNVTGV 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01433 131 Pfam Dof domain, zinc finger 14 67 IPR003851 GO:0003677|GO:0006355
Viun10g01433 131 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 12 92 IPR045174 GO:0003700|GO:0006355
Viun10g01433 131 ProSiteProfiles Zinc finger Dof-type profile. 13 67 IPR003851 GO:0003677|GO:0006355
Viun10g01433 131 MobiDBLite consensus disorder prediction 98 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01433 Viun-Chr10 28680944 28681476 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01433 9 113 C2C2-Dof Transcription Factor Family AT3G52440 62.712 1.59e-41 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Viun10g01433 zf-Dof 5.9e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01433 - - vun:114165491 276.559