Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01403 ATGGATTCTAGGAGGCGTAGAAATATGCAACGCAGGTTGCAAGAACTTCGAAGGGTCACAAACTCCAGCGCTGTTAACAAAGCCTCAATTATTGTCGATGCCACAAGATACATAGAGGAGCTCAAGCAAAAAGTCGATGGATTGAACTCTGAGCTTGGAACCGCTGAATCATCAATCTCCCAAGGCGAATTACCCATGGTCACCGTAGAAACCCTAGAAAGGGGTTTCCTTATTAATGTGTTTTCAGAAAGGAATTGCCCCGGCATGCTTGCGGCGATTCTGGACGCGTTTGAAGAACTGGGACTTGATGTTCTTGATGCTAGGGTTTCTTGTGAAGACACTTTCCAGCTTGAAGCTGTTGGAGGAGAAAGTGAAGAGAACGAAAGCATCGATGCACAAGTGGTGAAGCAAGCAGTGATGCAAGCAATCCAAAACATGGATTAA 444 0.455 MDSRRRRNMQRRLQELRRVTNSSAVNKASIIVDATRYIEELKQKVDGLNSELGTAESSISQGELPMVTVETLERGFLINVFSERNCPGMLAAILDAFEELGLDVLDARVSCEDTFQLEAVGGESEENESIDAQVVKQAVMQAIQNMD 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01403 147 Gene3D - 1 63 IPR036638 GO:0046983
Viun10g01403 147 CDD ACT_UUR-ACR-like 87 143 - -
Viun10g01403 147 Coils Coil 31 58 - -
Viun10g01403 147 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 3 144 - -
Viun10g01403 147 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 4 60 IPR036638 GO:0046983
Viun10g01403 147 ProSiteProfiles ACT domain profile. 78 147 IPR002912 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01403 Viun-Chr10 28059736 28061552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01403 4 110 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G17880 32.331 4.74e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01403 - - gmx:100499821 256.144