Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01396 ATGCAACCAAGAACAAGTAATGTTGGGGATGGCATTCGGGTAAGTACCTCAACTAGTAATTATTGTGGTGGGACTGAACTAGAAGACCTAGACTCATTTCGTGATGTGTACATATGGGGTAAGGTTTTGTCAAATGGGGTTTCACCTGAAGGGATTGGAACTCAAAATCCTTCTCAGATAGATGTGTTGATTCCAAAGCCTTTAGAGTCAAATGTTATTCTAGATGTTTGTCGCATTGCAACTGGTGCACACCACATTGCTGTAGTAACTAAGCAAGGGAATGTTTTTACGTGGGGAAAAGACTCAGGGGGAAGACTTGGTCATGGAATCGACAAAGATTTTGTGTCCCCACGTCAAGTTAAGTTTCTAGAAGGCACTGATTTTGTCTTTGTTGCATGTGGAGAGTATCACACAGGAGTTATATCGAAATGCTATGAACTTTACACATGGGGTGATGGAGAACATAACGTTGGACTTCTTGGACATGGTTCTGAGGCTAGCCATTGGATGCCGAAAATGGTGAGTGGCCCTTTAGAAGGAGTTGAGGTTGTGTCTGTTGCATGTGGCACATGGCATTCTGCATTGGCAACTTCAGATGGGAAACTTTTTACCTTTGGTGATGGTGCATTTGGTGTGTTGGGCCATGGAGATCAAGAGAGTTTGTGGTATCCAAAAGAAGTGAAACTTTTGAGTGGTTTGAAGACTATAAAGGTTGCATGTGGAGTTTGGCACACAGCAGCTATCATGGAGGTTGAATTTCAATCTGGTTCAGATTCTTCCTCTGGGAAGCTTTTCACATGGGGTAATGGAGATAAACATTGTCTGGGTCATGGAAACACAGAAACATACCTTCAACCTACAAGAGTTGCTCCACTTATGGGATATAACTTTCACCAAGTTTCATGTGGGCACACTATGACTGTTGCTTTAACTACATCTGGCCATGTTTTTGCAATGGGAGGAACTGAACATGGTCAATTGGGAAATCCTGTGGCTGCTGGAAAAGTACCTACTCTGATCCAAGATAAGTTGCTTGGTGAGATTGTTGAGGAAATATCATGTGGAGCACATCATGTTGTTGCTTTGACAAAGAAAGGTGAACTATATACATGGGGAAAGGGTGCCAATGGAAGATTAGGGCATGGAGATGTTGAAGATAGGAAATCTCCTACATTGGTGGTAGCCATGAAAGATAGGACTATAGAAAACATCTCATGTGGATATAACTTCACTTCATGTGTATGCATCCATAAATGGGTCTCTGGTACTGATCAAACACTTTGCTCTGGTTGTCGACAAGCGTTTGGTTTAACAAGAAAAAGACACAATTGTCACCACTGTGGTTTGGTGTTTTGTCATGCTTGCAGTACTAAAAGAGCGTTCAAAGCAGCATTGACTGCAACACCAGAAAAACTTCATCGTGTATGTGATAATTGCTATGTTAAGCTCAAAAAGTTTGATGAAATTGGTACTTCCAAGTTAGACAAAAAGCCTACTACTGCTACCATTACTACTACTACTGCTAATAACTCCATATATGAAAAGGAAAAACCAAACCATGCAGCAATAAGATTCTCAAAAACTCTCTTGGCTCCTATAACTGAACCAGTGAAATACCTTGAAATAAAGAATAATATCCATCAAGGGAATGATGATTCTTCCTTTGTACGAGCTTCCCTTGTTCCATCTCTTGTACAATTGAAAGATGTTGCATTTCCAAGTTCACTTAGTTCTATTCAAACTATTTTAAAGCCTATAATACCTCTTAGTCCGCCGCAAACTCCGCCGAAAACTACGACACCAAATACCAATCCGGGGCCCAAATTCACGAACACGGTGAGACAAAGCGCTCCACGCCCTGCTAGTCCTAGGTATTATGGAGGTATTAACGACAGTTTAAGAAGGACAAATGATATTTTGAATCAAGAAGTTGCAAAGTTACAGAAACAGATTCAAAGTTTAAGGGAAAAGAGTGACATGCAAGATTTGGAAATCAAAAGGCTTAACAAAAAGGCTACGGAAGCTTCTGCCCTTGCTGCAGTGGAATATTCTAATCACAGAGTAACGAAAGAATTTGTTGAATCTACTCTATCTCAGATGAAGGAAGTGACTGACAAATTGCCCGGAGAAATTTCAGAAAGTCGGCATTTGAAAGATGTACTTATTCGAGTCAAAGATTTTCTTAAAGAAACTTCAGACTCTGAAACATCTTCATCACCAAAGTTGAAGACTATGACAAAAATTGCACCTGTTAGAGGTACCTCAAATAACGACTCTTCCAAATTCCACGCTGAAAAAAAAGTGGCTGCAACAGAAGCCAAACCTTGTCAAGATGAAGTTCAACAAAGAAAAAAATCAAACTTAAAGTTGCATGAAGAAACAGATAAATCAAAGTTGGAGTCAACACAACAAAAGACACCTACTTCAGACTCCAGCACTTCAGACAAACTAGATGAAATTGTTCATGTCATAGAAGTTAACAATTGTGAAGAAAGAGGAAACTCTATCAAAGAAAGTGATGGATCAAAGTCGGAAATTGAAAACCGAAAACCTCGTACACTTTCCTCAGCTAGTAGTGACCTTTCTGAAATGTCAGATGATCATGTCTTCCATGATTGTATTGGTACACCAATGACTTCAGAAAACTCCGAAGAGAGTTCAAGATCTTCACGACCAGGAAATCAGGGAGAAGTACAAGTTATTGAAAAATTTGATCATGGAGTTTATGTCATTCTCATGTTACAGCCTGATGGTACCAAAATTTTTAAACGAGTTAAATTCAGTAAACGAAGATTCACCGAACATCAAGCAGAAAAATGGTGGAACGAAAACAAAGGTGGGGTTCTTAGGAAATATTGTCCAACACATCAAAAAAAACATTCTAATGTCACATCACATGTTAACGAAATTATTGACACTCCTCCTTCATCAATAGATTAG 2940 0.3942 MQPRTSNVGDGIRVSTSTSNYCGGTELEDLDSFRDVYIWGKVLSNGVSPEGIGTQNPSQIDVLIPKPLESNVILDVCRIATGAHHIAVVTKQGNVFTWGKDSGGRLGHGIDKDFVSPRQVKFLEGTDFVFVACGEYHTGVISKCYELYTWGDGEHNVGLLGHGSEASHWMPKMVSGPLEGVEVVSVACGTWHSALATSDGKLFTFGDGAFGVLGHGDQESLWYPKEVKLLSGLKTIKVACGVWHTAAIMEVEFQSGSDSSSGKLFTWGNGDKHCLGHGNTETYLQPTRVAPLMGYNFHQVSCGHTMTVALTTSGHVFAMGGTEHGQLGNPVAAGKVPTLIQDKLLGEIVEEISCGAHHVVALTKKGELYTWGKGANGRLGHGDVEDRKSPTLVVAMKDRTIENISCGYNFTSCVCIHKWVSGTDQTLCSGCRQAFGLTRKRHNCHHCGLVFCHACSTKRAFKAALTATPEKLHRVCDNCYVKLKKFDEIGTSKLDKKPTTATITTTTANNSIYEKEKPNHAAIRFSKTLLAPITEPVKYLEIKNNIHQGNDDSSFVRASLVPSLVQLKDVAFPSSLSSIQTILKPIIPLSPPQTPPKTTTPNTNPGPKFTNTVRQSAPRPASPRYYGGINDSLRRTNDILNQEVAKLQKQIQSLREKSDMQDLEIKRLNKKATEASALAAVEYSNHRVTKEFVESTLSQMKEVTDKLPGEISESRHLKDVLIRVKDFLKETSDSETSSSPKLKTMTKIAPVRGTSNNDSSKFHAEKKVAATEAKPCQDEVQQRKKSNLKLHEETDKSKLESTQQKTPTSDSSTSDKLDEIVHVIEVNNCEERGNSIKESDGSKSEIENRKPRTLSSASSDLSEMSDDHVFHDCIGTPMTSENSEESSRSSRPGNQGEVQVIEKFDHGVYVILMLQPDGTKIFKRVKFSKRRFTEHQAEKWWNENKGGVLRKYCPTHQKKHSNVTSHVNEIIDTPPSSID 979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01396 979 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 417 495 IPR013083 -
Viun10g01396 979 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 422 484 IPR017455 -
Viun10g01396 979 MobiDBLite consensus disorder prediction 876 896 - -
Viun10g01396 979 SUPERFAMILY RCC1/BLIP-II 35 419 IPR009091 -
Viun10g01396 979 CDD FYVE_like_SF 428 480 - -
Viun10g01396 979 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 26 694 - -
Viun10g01396 979 MobiDBLite consensus disorder prediction 730 818 - -
Viun10g01396 979 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 314 365 IPR000408 -
Viun10g01396 979 Coils Coil 630 671 - -
Viun10g01396 979 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 238 248 IPR000408 -
Viun10g01396 979 ProSiteProfiles BRX domain profile. 898 953 IPR013591 -
Viun10g01396 979 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 262 313 IPR000408 -
Viun10g01396 979 MobiDBLite consensus disorder prediction 831 850 - -
Viun10g01396 979 MobiDBLite consensus disorder prediction 603 618 - -
Viun10g01396 979 Gene3D - 178 292 IPR009091 -
Viun10g01396 979 Gene3D - 11 177 IPR009091 -
Viun10g01396 979 Gene3D - 293 416 IPR009091 -
Viun10g01396 979 PRINTS Chromosome condensation regulator RCC1 signature 186 202 IPR000408 -
Viun10g01396 979 PRINTS Chromosome condensation regulator RCC1 signature 95 111 IPR000408 -
Viun10g01396 979 PRINTS Chromosome condensation regulator RCC1 signature 303 321 IPR000408 -
Viun10g01396 979 PRINTS Chromosome condensation regulator RCC1 signature 361 382 IPR000408 -
Viun10g01396 979 PRINTS Chromosome condensation regulator RCC1 signature 145 161 IPR000408 -
Viun10g01396 979 PRINTS Chromosome condensation regulator RCC1 signature 202 216 IPR000408 -
Viun10g01396 979 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 93 144 IPR000408 -
Viun10g01396 979 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 200 251 IPR000408 -
Viun10g01396 979 MobiDBLite consensus disorder prediction 588 602 - -
Viun10g01396 979 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 79 89 IPR000408 -
Viun10g01396 979 Pfam FYVE zinc finger 418 484 IPR000306 GO:0046872
Viun10g01396 979 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 366 417 IPR000408 -
Viun10g01396 979 MobiDBLite consensus disorder prediction 733 758 - -
Viun10g01396 979 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 145 199 IPR000408 -
Viun10g01396 979 Pfam Regulator of chromosome condensation (RCC1) repeat 199 248 IPR000408 -
Viun10g01396 979 Pfam Regulator of chromosome condensation (RCC1) repeat 313 362 IPR000408 -
Viun10g01396 979 Pfam Regulator of chromosome condensation (RCC1) repeat 365 413 IPR000408 -
Viun10g01396 979 Pfam Regulator of chromosome condensation (RCC1) repeat 261 310 IPR000408 -
Viun10g01396 979 Pfam Regulator of chromosome condensation (RCC1) repeat 147 195 IPR000408 -
Viun10g01396 979 Pfam Regulator of chromosome condensation (RCC1) repeat 93 141 IPR000408 -
Viun10g01396 979 MobiDBLite consensus disorder prediction 759 800 - -
Viun10g01396 979 Pfam Transcription factor regulating root and shoot growth via Pin3 899 952 IPR013591 -
Viun10g01396 979 MobiDBLite consensus disorder prediction 587 629 - -
Viun10g01396 979 SUPERFAMILY FYVE/PHD zinc finger 418 491 IPR011011 -
Viun10g01396 979 SMART fyve_4 414 485 IPR000306 GO:0046872
Viun10g01396 979 MobiDBLite consensus disorder prediction 831 896 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01396 Viun-Chr10 27212190 27217812 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01396 875 952 Major Intrinsic Protein MIP AT1G31880 36.585 1.02e-08 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01396 - - vra:106773411 1319.68