Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01371 ATGTCTTTCAGTTTCACAGACCTACTTTCCAACAGCAATAATACCTTGACCATGGATGATGATCCTTTTGGACTTGAATTTGCTAACACTTTCAAACAACTTCAACCTCTCCCTCCTTATTCTGAGTTCCCACCTGGTTTTTCTCCAACAACACAGTCATTGAACTCACCCCTCTTGTTTTCTTCTCAAAATGTTCCTGCATCTTACACAACGGACTCATCTTCCATGAGCTTCGACATGAGAAACAGTTCAACTGACCTAGGAAACAAGGAGGAAGAGAGAAACTACTCTGACTTCTCTTTCCTAACAAAAACAAACGACGTGCCTCTCTTTCAATCTTCCACAAGCATGTTTCAAGTGGAGCCACTGAAGAAACAGGACACAATGATATTCAATGAAGCTGCAAAGCAAACAGATTTCTCATCTGAGAGGACAGAAACAAAATCTGAATATACAACCACTAAGGGATTCTCCACAGAAATTGCCTCAATCAAACGTGAAATACAAAGCAATTCTACTTCTGGGTCTGTTCAATTCAACTCTAACAATGCTTTTAAGTCTGTCAGAGAACAAAGAAGATCAGAAGATGGGTACAATTGGAGGAAGTATGGTGAGAAACAAGTGAAAGGAAGTGAGAATCCACGCAGTTATTACAAGTGCACGTATCCAAATTGTCCAACAAAGAAGAAAGTTGAGAGGTCTTTGGAGGGACATGTTACTGAAATAGTATACAGGGGAAGTCACAATCATCCTAAGCCACACAACAGAAAAAATGGCTCTCAATCAATGCATCAAACTTCTTCATCCTGCACCATCTCTGGGATTTCAGATCAGTCTTTGGGAGAGGAAGATTTTGAGCAAACATCACAAACTAGTTGCTCTGGAGGTGTTGATGATGATGACCTTGGACCTGAGGCCAAAAGATGGAAAGGAGAGAATGAAAATGATGACTATTCTAATTCCTCAGCTGGGAACAGAACTGTTAAGGAACCTAGAGTTGTGGTTCAAACCACAAGTGAAATTGACATACTAGATGATGGATACAGATGGAGGAAATATGGACAGAAAGTGGTCAAAGGAAACCCAAACCCAAGGAGTTACTACAAATGCGTTGCCCCAGGTTGTCCAGTGAGAAAACACGTTGAGAGAGCTGCAAATGACATGAAAGCTGTGCTAACAACCTACGAAGGGAAACATAACCATGATGTTCCTTTAGGACGAGGAAATGCAAGCTATAACAGAAGTTCTCTAAACAACAACACCAGCAATGTAACAGCACCTGCTCCTATAAGGCCTTCAGCAGTGAATAATTATTCTAACTCAGCAAGTTTCATCAATTCACTCCCTGACACGAAGCTCTCAGCATCTGCAAGTCAAGAAGCTGTTCCAATGGACATGTTGCTGAGCCCTGGAAGCCTAGGATTTTCGGCCAATGACTCGTTCCTTCAGTCTTTTTTTTCAAAGAACTTCTAA 1473 0.4121 MSFSFTDLLSNSNNTLTMDDDPFGLEFANTFKQLQPLPPYSEFPPGFSPTTQSLNSPLLFSSQNVPASYTTDSSSMSFDMRNSSTDLGNKEEERNYSDFSFLTKTNDVPLFQSSTSMFQVEPLKKQDTMIFNEAAKQTDFSSERTETKSEYTTTKGFSTEIASIKREIQSNSTSGSVQFNSNNAFKSVREQRRSEDGYNWRKYGEKQVKGSENPRSYYKCTYPNCPTKKKVERSLEGHVTEIVYRGSHNHPKPHNRKNGSQSMHQTSSSCTISGISDQSLGEEDFEQTSQTSCSGGVDDDDLGPEAKRWKGENENDDYSNSSAGNRTVKEPRVVVQTTSEIDILDDGYRWRKYGQKVVKGNPNPRSYYKCVAPGCPVRKHVERAANDMKAVLTTYEGKHNHDVPLGRGNASYNRSSLNNNTSNVTAPAPIRPSAVNNYSNSASFINSLPDTKLSASASQEAVPMDMLLSPGSLGFSANDSFLQSFFSKNF 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01371 490 Gene3D WRKY domain 329 405 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun10g01371 490 Gene3D WRKY domain 179 254 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun10g01371 490 MobiDBLite consensus disorder prediction 69 90 - -
Viun10g01371 490 ProSiteProfiles WRKY domain profile. 339 404 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun10g01371 490 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 115 422 IPR044810 GO:0003700
Viun10g01371 490 SUPERFAMILY WRKY DNA-binding domain 189 253 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun10g01371 490 ProSiteProfiles WRKY domain profile. 189 253 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun10g01371 490 MobiDBLite consensus disorder prediction 243 327 - -
Viun10g01371 490 SUPERFAMILY WRKY DNA-binding domain 336 404 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun10g01371 490 MobiDBLite consensus disorder prediction 69 84 - -
Viun10g01371 490 FunFam WRKY transcription factor 33 331 397 - -
Viun10g01371 490 Pfam WRKY DNA -binding domain 345 401 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun10g01371 490 Pfam WRKY DNA -binding domain 195 251 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun10g01371 490 SMART WRKY_cls 194 252 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun10g01371 490 SMART WRKY_cls 344 403 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun10g01371 490 FunFam WRKY transcription factor 181 254 - -
Viun10g01371 490 MobiDBLite consensus disorder prediction 300 315 - -
Viun10g01371 490 MobiDBLite consensus disorder prediction 258 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01371 Viun-Chr10 26435142 26438415 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01371 194 424 WRKY Transcription Factor Family AT2G03340 54.510 4.05e-82 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Viun10g01371 WRKY 9.2e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01371 K13424 - gmx:100127367 800.045