Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01340 ATGGAGTTGGCTTCTTCATCATCTTCATCCTTCCTAAAATCGGAACCCCATTTCATATACGATGTGTTCATCAACTTTTGGGGAGAAGACATCCGGAGAAAATTCGTTTCTCATCTTCATTCTGTTCTTTTACAAGCTCAAGTCAAAACATTGATTAACGAGGAGAACCTGCAGGAGGGAATTACGCTGGAAGAGAACATGCGAGCAATAGCAGCCTCTAAGATTGCAATAATCGTTTTCTCCAAAACATACACTGAATCTACCTGTTGTCTTCGTGAGCTTGAAAAAATCATCGAATGCCGGGAAACTTTTGGCCAAATAGTTCTGCCAGTATTTTACGAGCTTTATCCATTCGATGTACGTTATCAACAAGATGACTTTGGAAAATCGTTGGAAGAAACTGGACACAAAAGCTATTCAGGAGAACAACTAGAACATGCATTATCCAGTTGGAGCCGTGCACTCAACATAGCTGCAAGTATCACTGGTTGGGATGTCAAAGATTTCAGGCATGATGCTGAACTTGTGGAGGAAATTGTTAGCCGCGTTCAGGCATTATTGGACTATAAAGACTTGTTTATTACCCAATTTCCTGTTGGATTAGAGTCCCATGTGGAAAAGGTGATTGGATGTATTGAAAATCATTCCACCAAAGTGTGCATGATAGGGATATGGGGAATGGGAGGATCAGGTAAAACTACCTTAGCCAAAGCCATCTACAATCAAATTTATCATCCATTTATTGGTAAGAGTTTTATTGAAAATGTTAGAGAAGTTAGGGATCAAGTAAATAGGCATGTTGATTTGCAAGAAAAATTTCTTTATGAGGTTCTTAAATCCAAGTTTGAGGTTAAAACCATTGGGATGGGAAGAAGTATCATCGAGAATGAACTTTCTAAAAAAAGGTTGCTCATTGTGCTTGATGATGCGAATGAGTTTTGCCATTTAGAAAACCTATGCGGGAATCGTGGATGGTTTGGTCAAGGAACTGTGATAATCATTACCACTAGAGATGTTCGAGTACTGAACCAACTCAAAGTTGATTTTGTTTATAAGATGGATGTGATGAACGAAAATGATTCCCTTGAGCTTTTATGTTGGCATGCCTTTAGAGATGCAAAACCAAGTGAAGACTTCAATGAACTTGCCAGAAACATAGTTACTTATTGTGGAGGACTACCACTAGCTCTTGTGGTCCTTGGTTCCCATTTATATGATAAGACATTGGAAATGTGGGAAAGTGTAACTTTAAAGCTACAAATATTTCCTGATGAACGCATTCTACGAAATTTGGAAAAAGGTTTTGAAGCTTTGTGTGATGACATGGAAAAGGATATATTTCTTGATGTATGTTGTTTCTTTATTGGTAAAGATAGAGGCTATGTCACAGAGATACTAAATGGCTGTGGACTACATGCTGATATTGGAATGACAATTCTCATAGAACGTGGTCTTATAAAAGTTGAAAGGAACAATAAACTTGAAATGCATCCTTTGTTACGGGATATGGGAAGAGATATTATTCGTCGAAGATGGCCAAAGGAACCGGGGAAAAGGAGTCGATTATGGTTTCATGAGGATGTAAAACATGTACTGCAAAATAAAACTGGGTCAAAAGCTACTGAAGGATTGTCCCTGAAATTGCATTCAACCAACAGAGATTGCTTCAAAGCTCATGCTTTCAAGCAAATGAAGAGGTTGAGACTGCTACAACTGGATCATGTTCAACTTGTTGGAGACTATGGGTACCTTTCTAAACAACTGAGATGGATTTGTTGGCAAGGGTTTCCTTCACAATACATTCCAAACAACTTTCATATGGAAAATGTAATTGCAATTGATTTAAAGCATAGTCATCTTCAACTCGTCTGGAGACAACCCCGGGTTTTAGAGGGGTTAAAATTCCTTAATCTTAGTCACTCCAAGTACTTGAGAGAAACACCTGATTTTTCAGGACTACCAAGTCTTGAACAACTTATTCTAAAAGATTGTACAAGTTTGTGCAAGGTACACCCATCCATTGGAGATCTCTGTAATCTACTACTGATAAATTTGAGGGACTGCACAAGTCTAACCAGTCTCCCCAAAGAGGTATATAAGTTGAAATCTTTAAAAACTTTCAACCTCTCTGGTTGTTTCAAGATTGACATATTGAAGGAAGATATAATGCAGATGGAATCCTTGATAACACTAATTTCTGAAAATACTGTTGTGAAACAAGTGCCTTGTTCAATTGTGAGCTCTAAACACATGGCATATATATCCCTGCATGGATTTGAAGGATTGTCACATAATTTTTTTTCTTCTACCATTCGGTCTTGGATGTCCCCAACAATGAATTCCCAATCTTATATCAGTCCATTGTGCCTTGATACGAACAATGATAATTGGGGAGAACTTGCGCCATTGCATAGCTGCCTCACAAATCTTCGAAGTATGTTGGTTCAATGTGACACGGAGTTTCAACTATCTATGCAACTAAACACAATTCTTGTCGAATACGGTGCAAATTTTATAGAATCAAGAATTTCAAATCATCGTTTGAGGTTTTCTTTGATAGGTGTTGGAAGTTGCAATGAATTCTTCAACACTCTCAGCGATAATGTTTCTAAGGGATTCGCAAGGAGTAAGTGTTGTGATGTTCCTCTTCCAGGTGACAACCATCCTTATTGGCTGAGCCATATTGGTGATGGAAATTCTGTTTCTTTCACTATGCCTAAGGATTGTGACATGAAGGGAATAGCTTTGTGTGTTGCTTATTTATCAACCCCTGAAATGGTGGCAACTGAATGTTTTAGAAGTGTGTTAATTGTTAATTACACAAAGTGCACATGCCATATACACAACCATGGCACAGTAATGTCCTTTAATGATGAAGATTGGCATGGCATAATGTCAAATTTAGAGTCTGGAGACAAGGTGGAGTTTTTTGTGAGTTGTGGTCATGGATTGGTGTTCAAGAACACAGCAGTCTATTTGATATACGGTGACTAA 2994 0.3804 MELASSSSSSFLKSEPHFIYDVFINFWGEDIRRKFVSHLHSVLLQAQVKTLINEENLQEGITLEENMRAIAASKIAIIVFSKTYTESTCCLRELEKIIECRETFGQIVLPVFYELYPFDVRYQQDDFGKSLEETGHKSYSGEQLEHALSSWSRALNIAASITGWDVKDFRHDAELVEEIVSRVQALLDYKDLFITQFPVGLESHVEKVIGCIENHSTKVCMIGIWGMGGSGKTTLAKAIYNQIYHPFIGKSFIENVREVRDQVNRHVDLQEKFLYEVLKSKFEVKTIGMGRSIIENELSKKRLLIVLDDANEFCHLENLCGNRGWFGQGTVIIITTRDVRVLNQLKVDFVYKMDVMNENDSLELLCWHAFRDAKPSEDFNELARNIVTYCGGLPLALVVLGSHLYDKTLEMWESVTLKLQIFPDERILRNLEKGFEALCDDMEKDIFLDVCCFFIGKDRGYVTEILNGCGLHADIGMTILIERGLIKVERNNKLEMHPLLRDMGRDIIRRRWPKEPGKRSRLWFHEDVKHVLQNKTGSKATEGLSLKLHSTNRDCFKAHAFKQMKRLRLLQLDHVQLVGDYGYLSKQLRWICWQGFPSQYIPNNFHMENVIAIDLKHSHLQLVWRQPRVLEGLKFLNLSHSKYLRETPDFSGLPSLEQLILKDCTSLCKVHPSIGDLCNLLLINLRDCTSLTSLPKEVYKLKSLKTFNLSGCFKIDILKEDIMQMESLITLISENTVVKQVPCSIVSSKHMAYISLHGFEGLSHNFFSSTIRSWMSPTMNSQSYISPLCLDTNNDNWGELAPLHSCLTNLRSMLVQCDTEFQLSMQLNTILVEYGANFIESRISNHRLRFSLIGVGSCNEFFNTLSDNVSKGFARSKCCDVPLPGDNHPYWLSHIGDGNSVSFTMPKDCDMKGIALCVAYLSTPEMVATECFRSVLIVNYTKCTCHIHNHGTVMSFNDEDWHGIMSNLESGDKVEFFVSCGHGLVFKNTAVYLIYGD 997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01340 997 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 740 IPR044974 GO:0006952
Viun10g01340 997 Pfam TIR domain 20 183 IPR000157 GO:0007165
Viun10g01340 997 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 449 IPR027417 -
Viun10g01340 997 Pfam NB-ARC domain 202 425 IPR002182 GO:0043531
Viun10g01340 997 Gene3D - 355 439 IPR042197 -
Viun10g01340 997 Gene3D Ribonuclease Inhibitor 531 781 IPR032675 -
Viun10g01340 997 SMART till_3 19 161 IPR000157 GO:0007165
Viun10g01340 997 SUPERFAMILY Toll/Interleukin receptor TIR domain 15 164 IPR035897 -
Viun10g01340 997 ProSiteProfiles TIR domain profile. 18 187 IPR000157 GO:0007165
Viun10g01340 997 SUPERFAMILY L domain-like 509 812 - -
Viun10g01340 997 SUPERFAMILY "Winged helix" DNA-binding domain 435 533 IPR036390 -
Viun10g01340 997 Gene3D - 19 192 IPR035897 -
Viun10g01340 997 Gene3D - 193 350 IPR027417 -
Viun10g01340 997 PRINTS Disease resistance protein signature 297 311 - -
Viun10g01340 997 PRINTS Disease resistance protein signature 699 715 - -
Viun10g01340 997 PRINTS Disease resistance protein signature 221 236 - -
Viun10g01340 997 PRINTS Disease resistance protein signature 390 404 - -
Viun10g01340 997 FunFam Disease resistance protein (TIR-NBS-LRR class) 17 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01340 Viun-Chr10 25876594 25880572 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01340 20 745 WRKY Transcription Factor Family AT4G12020 30.133 1.49e-79 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01340 - - pvu:PHAVU_010G027900g 1422.91