Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01339 ATGGAGATCGCTACTTCTTCTTCATCTTCATCGTTCTTAAAATCTGAACCCCACTTCATAAACGACGTGTTCATCAACTTTCGGGAAGAGGAAATCAGTAGAAAGTTTGTTTGGCATCTAAAAAATGTTCTTTTACAAGCTCAAGTCAAAACTTTGGTTGAAGAGGAGAATCTGCAGGAGAGAATGAAGCTAGAAGAACACATGGGAGCAATAGCTTGCTCTAAGATTGCAATAATTGTTTTCTCCGAAACGTACTCTGAATCTGCCCTGTGTCTTCGAGAGCTTGAAAAAATCATTGAATGCCACGAAACTTTCGGCCAAATAGTTATGCCCGTATTTTACCAAGTTAACCCATTCGATGTATGTACTAAATGTGATTTTGGAAAAGCGTTGGAAGAAGCTGCAGAGGAAAGCTATTCAGAAGAACAGCTGAAACATGCATTATCCAGGTGGAGCCATGCACTCACCAAAGCTGCACTTATCACTGGTTGGGATGTCAAAGATTTCAGGCATGATGGTGAACTTGTGGAGGTAATTGTTAGCCGCATTCAAACATTACTGGACTATAAAGACTTGTTTATTACCCAATTTCCTGTTGGATTAGAGTCCCGTGTGGAAAAGGTGATTGGATGTATTGAAAATCATTCCACCAAAGTGTGCATGATAGGGATATGGGGAATGGGAGGATCGGGTAAAACTACCATAGCCAAAGCCATATACAATCGAATTTATCGTATATTCATTGGTAAGAGTTTCATTGAAAATATCAGAGAAGTTTATGATGGAGTAAGTAGAAGCAACATTCATTTGCAAGAACATCTTCTTTATGATGTCCTAAAATCCAAGTTGCAGCTGGAAAGCATTTCCTTGGGAAGAACTAAGATCGAGAATGAACTTTCTCGAAAAAGGTTGCTCATTGTGCTTGATGATGTAAATGAATTTGACCAATTAGACAGCCTATTTGGAAAAGATGAATGGTTTGGTCAGGGAAGTGTAATAATCATTACAACTAGAGATGTACGACATCTTAGGAGAAATAACGTAGATTATGTTTATAAGACAGAGGAAATGAACGAAACTGAGTCCCTCGAGCTTTTTAGTTGGCACGCTTTTGGAGAAGAAAAACCAATAGAGGACTTCAATGATGTTGCAAGAAATGTAGTTGGTTATTGTGGAGGACTACCTCTAGCTCTAGAGGTTCTTGGTTCTTACTTAAGTGAGAGGACAAAGAAGGAGTGGAAAAGTGTGTTTTCAAAACTAAAAATAATTCCAAATACAAAAGTTCAAGAAAAATTGAGAATAAGTTTTGACGATTTACGTGATGAGGTGGAACAGGAAATATTTCTTGATATATGTTGTTTCTTTATTGGTAAAGAAAGAGGCTATGTTACAGAGATACTAAATGGTTGTGGACTACGAGGTGATATTGAAATAAGAGTTCTCATAGAGCGGGCTCTCATTAGCGTTGAAAGGAACAACAAACTTGGAATGCATCCTTTGCTACGAGACATGGGAAGAGAAATTATTCGTGAAAGATGGCCAGTGGAAACAGAGAACAGGAGTCGATTATGGTTTGATGATGATGTAAAACATATACTGACAAACAATACTGGGACAGAAGCTACCGAGGGATTATCCCTGAAACTGCATTCAACCAGCACAGATTGCTTCAAAACTCGTGCTTTCAAGGAAATGAAGAGATTGAGATTTCTACAATTGGATAATGTACAACTTGCTGGAGAATATGGTTATCTTTCTAAACAGTTGAGATGGATTTGTTGGCAAGGGTTTCCTTTTAAATACATTCCAAACAACTTTCATATGAAAAGTGTAATTGCAATTGATTTAAAACATAGTTATCTTCACCTCGTCTGGAAAAAAGCCCAGATTTTAGAGTGGCTAAAAATCCTTGATCTTAGTCACTCTATGTACTTGAGAGAAACACCTGACTTTTCCAGATTACCAAGTCTTGAACAACTCATTCTAGAAGATTGCCCAAGTTTGTGCAAGGTACACCCATCCATTGGAGATCTCGGCAATCTGCAATTGATAAATTTAAAGGACTGTACAAGTCTAAGCAATCTCCCCAGAGAGGTATACAAGCTAAAATCTTTAACAACTTTTGTCCTTTCTGGTTGTTTGAAGATTGACATATTGGAAGAAGATATAGCGCAAATGGAATCCTTGATAATACTAGTTGCAGAAAATACTGCTGTAAAACAAATTCCATTTTCAATTGTAAGCTCACAAAGCACAGGATATATATTCCCAGAAGGATTTGAATCTGAAATTTCTCACTTTATCATTCAATCTTGGATGTCACCAACATTGAATCCCCACTCTTCTTGCCTGTATTGGATGGAAATAGAGGATTATAATTGGCATGTGCATGGGCCATTGCATACCGGCCTTGCAAATCTTCGAAGTATTTTGGTTAAATGTGACACTGAGTTTAAACTATCTTTTCTAGTGAAATCAATTGTTGTCGAATATGGTGTAAATTTTACAGAATCAAGAATTTCAAACCAGCGCTTGAGGAGGTTTTCTTTGATTGGTGTCGGAAGATATAATGAATTCCTCAATACACTCAGCACTAGAGTTTCTGAGGAATTGGCAAGCAGTGAGTCTTGTGAATTCTCTGTTCCAGGAGACAACCATCCTTATTGGTTTGCCCATATGGGTAATGGATATTCTGTTTCTTTCACCGTGCCTCAGGATTGTGACATCAAGGGAATGATTTTGTGTTTTGTTTATTTATCAACCCCTGTAATCATAGCAACCGAATGTGTTACAAGTGTCTTAATAGTTAATTACACAAAGTGCACACTACACATGCACAACCATGACACAGTAAATTCCCTTAATGATGAAGATTGGCGTGGCATAATATCAAATTTAGGACCTGGAGACAAGGTGGAGATTTTTTTGACTTTTGGTCATGGATTGGTGGTCAAGAACACAGCTGTGTATCTTATATATGGTGAATCAAATGACATGGAAATAGAGCCTTGCCGAGCCAAAGGAAAATGCTCTGCATAA 3039 0.3768 MEIATSSSSSSFLKSEPHFINDVFINFREEEISRKFVWHLKNVLLQAQVKTLVEEENLQERMKLEEHMGAIACSKIAIIVFSETYSESALCLRELEKIIECHETFGQIVMPVFYQVNPFDVCTKCDFGKALEEAAEESYSEEQLKHALSRWSHALTKAALITGWDVKDFRHDGELVEVIVSRIQTLLDYKDLFITQFPVGLESRVEKVIGCIENHSTKVCMIGIWGMGGSGKTTIAKAIYNRIYRIFIGKSFIENIREVYDGVSRSNIHLQEHLLYDVLKSKLQLESISLGRTKIENELSRKRLLIVLDDVNEFDQLDSLFGKDEWFGQGSVIIITTRDVRHLRRNNVDYVYKTEEMNETESLELFSWHAFGEEKPIEDFNDVARNVVGYCGGLPLALEVLGSYLSERTKKEWKSVFSKLKIIPNTKVQEKLRISFDDLRDEVEQEIFLDICCFFIGKERGYVTEILNGCGLRGDIEIRVLIERALISVERNNKLGMHPLLRDMGREIIRERWPVETENRSRLWFDDDVKHILTNNTGTEATEGLSLKLHSTSTDCFKTRAFKEMKRLRFLQLDNVQLAGEYGYLSKQLRWICWQGFPFKYIPNNFHMKSVIAIDLKHSYLHLVWKKAQILEWLKILDLSHSMYLRETPDFSRLPSLEQLILEDCPSLCKVHPSIGDLGNLQLINLKDCTSLSNLPREVYKLKSLTTFVLSGCLKIDILEEDIAQMESLIILVAENTAVKQIPFSIVSSQSTGYIFPEGFESEISHFIIQSWMSPTLNPHSSCLYWMEIEDYNWHVHGPLHTGLANLRSILVKCDTEFKLSFLVKSIVVEYGVNFTESRISNQRLRRFSLIGVGRYNEFLNTLSTRVSEELASSESCEFSVPGDNHPYWFAHMGNGYSVSFTVPQDCDIKGMILCFVYLSTPVIIATECVTSVLIVNYTKCTLHMHNHDTVNSLNDEDWRGIISNLGPGDKVEIFLTFGHGLVVKNTAVYLIYGESNDMEIEPCRAKGKCSA 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01339 1012 Pfam TIR domain 22 183 IPR000157 GO:0007165
Viun10g01339 1012 Pfam NB-ARC domain 202 421 IPR002182 GO:0043531
Viun10g01339 1012 SUPERFAMILY "Winged helix" DNA-binding domain 427 533 IPR036390 -
Viun10g01339 1012 Gene3D - 192 351 IPR027417 -
Viun10g01339 1012 Gene3D - 356 440 IPR042197 -
Viun10g01339 1012 SUPERFAMILY Toll/Interleukin receptor TIR domain 16 159 IPR035897 -
Viun10g01339 1012 Gene3D Ribonuclease Inhibitor 533 762 IPR032675 -
Viun10g01339 1012 PRINTS Disease resistance protein signature 221 236 - -
Viun10g01339 1012 PRINTS Disease resistance protein signature 391 405 - -
Viun10g01339 1012 PRINTS Disease resistance protein signature 676 692 - -
Viun10g01339 1012 PRINTS Disease resistance protein signature 298 312 - -
Viun10g01339 1012 ProSiteProfiles TIR domain profile. 19 187 IPR000157 GO:0007165
Viun10g01339 1012 Gene3D - 15 189 IPR035897 -
Viun10g01339 1012 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 22 738 IPR044974 GO:0006952
Viun10g01339 1012 SUPERFAMILY L domain-like 547 752 - -
Viun10g01339 1012 SMART till_3 20 161 IPR000157 GO:0007165
Viun10g01339 1012 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 194 451 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01339 Viun-Chr10 25870420 25874619 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01339 22 746 WRKY Transcription Factor Family AT4G12020 29.223 1.05e-72 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01339 - - pvu:PHAVU_010G027900g 1344.72