Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01323 ATGGGACGCAACAGTTGTCATGTCAAAGATTTCTACACAGACCCTTTTCAGCTTAACCTCCCTTTTGCTTCATATGGTCATAGGAGGAGGAACCACAAAGGTGGTGGGGGTGGTGGTTTTATTTGCTTAGCCTTTTTTGTGTTTCTTTTGCAGGCTTTGGCTTCTGCCATTCAGCCTGTTTCAGGGCAGTTGTGGGATGGGGTGGTTGTGACTCAAGCTGATTTTCAAGCCCTGAGGGCTATTAAGAATGAGCTAATTGACTTCAAAGGGGTTCTCAAGAGCTGGAATGATAGTGGTCTAGGTGCTTGTTCAGGGTGGGCAGGAATCAAGTGTGTGAATGGTGAGGTTATTGCAATTCAGCTTCCTTGGAGAGGGTTAGGTGGCAGGATCTCTGAGAAAATTGGCCAACTTCAGTCTCTTAGGAAGCTCAGTCTTCATGACAATGTTCTTGCTGGTCCAGTTCCTTTCTCACTTGGTCTCCTTCCTAACCTTAGAGGGGTTTATCTCTTCAACAACAAGCTTTCAGGTTCTATTCCTCCTTCCCTTGGCAATTGTCCAATGCTTCAGTCTCTTGATATTAGCAATAATTCCCTCAGTGGTAAAATCCCTCCCAGTTTAGCAAGATCTACTAGGATGCTTCGGATCAATTTGAGCTTCAACTCACTTTCTGGATCCATTCCTAGCAGTTTAACCATGTCTCCTTCTCTAACCATTCTTGCCCTCCAACACAACAATCTCTCTGGCTCTATCCCAGATTCTTGGGGTGGAGCTGGAAAGAAGAAAGCTTCCCAGCTTCAAGTTTTGACCCTTGATCACAATCTCATTTCTGGAATCATTCCAGTTTCTCTAGGCAAGCTAGCTTTACTTGAAAATGTTTCTTTGAGTCATAACCTCATTGTAGGGCCTATTCCAAGTGAACTAGGTGCACTTTCCAGGCTTCAAATTCTTGATCTTTCAAACAATGCCATCAATGGCAGCATTCCTGCTAGCTTCTCTAACCTTTCTTCTCTAGTTTCATTAAACCTAGATAGCAATCAACTTGCAAACCATATTCCAGATTCTTTGGACAGGTTGCACAACCTTTCTGTGCTTAACCTGAAGAACAATAAGCTTGATGGCGAAATCCCACCAACAATAGGTAATATCTCAAGCATTAGCCAAATTGATTTCTCCGAGAACAAATTAGCTGGAGGAATCCCAGATTCCTTCACTAAACTTGCGAATCTCAGTTCATTCAACGTCTCTTACAACAACCTATCTGGTCCTGTCCCATCTCTACTTTCCAAAAGATTCAATGCTAGCTCTTTTGTAGGGAATCTTGAGCTATGTGGGTATATCAGTTCAAAACCATGCCCTTCACCCCCTCCTCATAATCTTCCAGCTCAATCACCACAACCTCTTTCTAAGCCTCATCACCGCAAACTAAGCACCAAAGACATAATCCTCATAGTGGCAGGTGTTCTTCTGTTGATTCTGTTATTACTGTGCTGCTTTTTGTTGTGTTGTTTGATCAGGCGAAGAACTGCTTCGAGCAGAAAGAGTGGCAAAGCTGCTAAGGCTGCAGCATCTGCTAGGAGTCTTGAGAAAGGTGCTTCAGCTGGTGGTGAGGTTGAATCAGGAGGTGAAGCTGGTGGGAAACTAGTTCACTTTGATGGGCCTTTTGTGTTTACTGCTGATGATCTTTTGTGTGCAACTGCGGAGATAATGGGAAAAAGTGCATATGGAACAGCATATAAAGCAACACTGGAAGATGGTAACCAAGTTGCTGTGAAGAGGTTGAGGGAAAAGACTACTAAAGGGCAGAAGGAGTTTGAAACAGAGGTTGCTGCACTTGGCAAAATCAGACACCCAAATCTCTTGGCACTCAGAGCCTACTATTTAGGACCAAAAGGAGAGAAGCTTCTTGTCTTTGATTACATGACAAAAGGAAGTCTAGCATCATTCCTTCATGCTCGCGGGCCTGAAATTGTTATTGAATGGCCAACAAGGATGAAGATAATGATTGGAGTGACTAGGGGATTGAGCAACCTCCATAGCCAAGAGAACATTGTACATGGGAACCTCACATCAAGCAACATACTATTGGATGAGCAAACAGAAGCCCACATAACAGATTTTGGTCTCTCAAGGCTGATGACAACTTCTGCCAACACCAACATCATTGCCACTGCAGGAAGCCTTGGCTACAACGCACCAGAGCTTTCCAAGACCAAGAAGCCTAACACAAAGACTGATGTGTACAGTCTTGGTGTCATCATGTTGGAACTCCTAACTGGAAAGCCACCTGGGGAACCAACCAATGGCATGGACTTGCCCCAATGGGTTGCCTCCATAGTGAAAGAAGAATGGACTAATGAAGTGTTTGATTTGGAACTCATGAGGGATGCACCAGCCATAGGGGATGAGTTGCTTAACACATTGAAGTTGGCACTGCATTGTGTTGATCCATCTCCTGCTGCTAGGCCTGAAGTACACCTAGTTCTGCAGCAATTGGAGGAGATCAAACCAGACTTGGCTGCAGGGGATGATGGAGCTACCAAGGTTCAAACAACTGAGTAA 2559 0.4435 MGRNSCHVKDFYTDPFQLNLPFASYGHRRRNHKGGGGGGFICLAFFVFLLQALASAIQPVSGQLWDGVVVTQADFQALRAIKNELIDFKGVLKSWNDSGLGACSGWAGIKCVNGEVIAIQLPWRGLGGRISEKIGQLQSLRKLSLHDNVLAGPVPFSLGLLPNLRGVYLFNNKLSGSIPPSLGNCPMLQSLDISNNSLSGKIPPSLARSTRMLRINLSFNSLSGSIPSSLTMSPSLTILALQHNNLSGSIPDSWGGAGKKKASQLQVLTLDHNLISGIIPVSLGKLALLENVSLSHNLIVGPIPSELGALSRLQILDLSNNAINGSIPASFSNLSSLVSLNLDSNQLANHIPDSLDRLHNLSVLNLKNNKLDGEIPPTIGNISSISQIDFSENKLAGGIPDSFTKLANLSSFNVSYNNLSGPVPSLLSKRFNASSFVGNLELCGYISSKPCPSPPPHNLPAQSPQPLSKPHHRKLSTKDIILIVAGVLLLILLLLCCFLLCCLIRRRTASSRKSGKAAKAAASARSLEKGASAGGEVESGGEAGGKLVHFDGPFVFTADDLLCATAEIMGKSAYGTAYKATLEDGNQVAVKRLREKTTKGQKEFETEVAALGKIRHPNLLALRAYYLGPKGEKLLVFDYMTKGSLASFLHARGPEIVIEWPTRMKIMIGVTRGLSNLHSQENIVHGNLTSSNILLDEQTEAHITDFGLSRLMTTSANTNIIATAGSLGYNAPELSKTKKPNTKTDVYSLGVIMLELLTGKPPGEPTNGMDLPQWVASIVKEEWTNEVFDLELMRDAPAIGDELLNTLKLALHCVDPSPAARPEVHLVLQQLEEIKPDLAAGDDGATKVQTTE 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01323 852 ProSiteProfiles Protein kinase domain profile. 563 838 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g01323 852 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 184 258 - -
Viun10g01323 852 Pfam Leucine rich repeat N-terminal domain 73 111 IPR013210 -
Viun10g01323 852 SUPERFAMILY L domain-like 110 445 - -
Viun10g01323 852 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 263 834 - -
Viun10g01323 852 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 259 454 - -
Viun10g01323 852 Gene3D Transferase(Phosphotransferase) domain 1 641 846 - -
Viun10g01323 852 PRINTS Leucine-rich repeat signature 310 323 - -
Viun10g01323 852 PRINTS Leucine-rich repeat signature 188 201 - -
Viun10g01323 852 Gene3D Ribonuclease Inhibitor 219 457 IPR032675 -
Viun10g01323 852 Pfam Leucine Rich Repeat 188 206 IPR001611 GO:0005515
Viun10g01323 852 Gene3D Ribonuclease Inhibitor 70 218 IPR032675 -
Viun10g01323 852 SUPERFAMILY Protein kinase-like (PK-like) 567 836 IPR011009 -
Viun10g01323 852 CDD STKc_IRAK 569 834 - -
Viun10g01323 852 Pfam Protein tyrosine and serine/threonine kinase 567 831 IPR001245 GO:0004672|GO:0006468
Viun10g01323 852 SMART LRR_typ_2 358 382 IPR003591 -
Viun10g01323 852 SMART LRR_typ_2 161 185 IPR003591 -
Viun10g01323 852 SMART LRR_typ_2 406 429 IPR003591 -
Viun10g01323 852 SMART LRR_typ_2 334 357 IPR003591 -
Viun10g01323 852 SMART LRR_typ_2 310 333 IPR003591 -
Viun10g01323 852 FunFam Leucine-rich repeat receptor-like kinase 73 183 - -
Viun10g01323 852 Gene3D Phosphorylase Kinase; domain 1 569 640 - -
Viun10g01323 852 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 640 838 - -
Viun10g01323 852 FunFam Leucine-rich repeat receptor-like protein kinase 549 639 - -
Viun10g01323 852 Pfam Leucine rich repeat 309 347 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01323 Viun-Chr10 25405946 25409470 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01323 65 836 Receptor kinase-like Gene Family AT3G51740 70.566 0.0 1045
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Viun10g01323 PK_Tyr_Ser-Thr 1e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01323 - - gmx:100799290 1382.08