Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01316 ATGGGAGGGTGTTGCTGCAGCCAGGTTTCAGTACATGAGGTGGAATGTGAACATGGTGGGGAGCGTATCATGTTAAGAGGGTCCTCTGAGTTTATATCAATGTACAGTAAAAAGGGTTCAAAAGGAGTTAACCAAGATGCATTGACTGTGTGGAAGGACTTCAGTGGAAAGAAGGACATGATCTTTTGTGGGGTGTTTGATGGTCATGGTCCTCTGGGACACAAGTTTTCAAATTCTATACGTGACAAATTACCCTTAAAACTCTCAGCATCAATCAAGCAGTCACAACAAAAGGCCATCAAAGACAATGATACTAATGAAACAGACGTAATTAGTCATAGTAATGTCTATGCTGAGGATAACCAAAACATGTCCTTTTCTTCATGGGAGGGAAGCTTCATGAGATGCTTCAGTGAAATGGATGAAGACCTTGCAAAAAACATAGACACTAAAGGATTTCGTGGCGGTAGCACTGCTGTAACTGTTATCAAACAGGAAGACGAATTAATAATTGGAAACTTGGGGGATTCTCGTGCAGTTCTTTGCAGAAGAGCAGATGACAACAATCTTGTTCCTGTTCAACTTACTGTTGACTTGACCCCAGATATTCCAAGTGAAGCTTTAAGAATATTTAATTGTGGAGGTAGAATTTTTTCTACAAAACAAGATCCAAGTGTAAATAGAATATGGAGGTCAAACGGGGATCGTCCTGGTCTAGCTATGGCAAGAGCCTTCGGAAATTTCTGCCTAAAAGATTATGGTCTCATATCAGTCCCGGATCTATCATACAGAAAACTTACCAAGCAGGATGAGTTTGTGGTTTTGGCCTCTGATGGGGTATGGGATGTGCTAACTAACAGTGAAGTAATAAACATAGTTGCTTCAGCACCGAAAAGGTCCATGGCAGCCAAATTGTTAGTGAACCACGCAGTTCAAGCTTGGAGACGCACGTGTGTTTTGACGGTTGATGATTGCACAGCTATATGCCTTTTCTTGAAGGATTAGACTGTTCTGATTCAATCCTGATCCGATGGTCTTAGATCCCCTGGTTTTGGTTGTAATGTGGCGTATCCATGCTATGCTGCTAACAGGAGGAGGAGGAATAGTGGTGCTGATGACATCGCGGAGGCCATTCATCGGATGGTGGATGCAATGCAAACACCGGTGACAGCGCAGCTTAGGACAGCCATTGCACCTGTCAGAGTGCCAACTGTGGAGGACTTCTTGCACCACAAACCAGCGGAGTTCAATGGCAAGGCCTCTTCGGATGAAGCGGATGCTTGGCTCCGCAAGTGTGAGAAGATTTTTAAAGTGATGAATTGCCCTGATGAGCAGAAGTTACTTTTCGCCACTTATCTGCTGAACGACGACGTGGAGTATTGGTGGACGGGAATGCAACAACAGATGCAGACCCGAGATGAACAGGTGGAGTTGACTAGCTTCAGGACGCAGTTCCTGGAGAAATATTTCCCCGACACAGCCAGACAGGACCGGGAGGCAAAGTTCCTCGCACTACAGTAG 1521 0.4471 MGGCCCSQVSVHEVECEHGGERIMLRGSSEFISMYSKKGSKGVNQDALTVWKDFSGKKDMIFCGVFDGHGPLGHKFSNSIRDKLPLKLSASIKQSQQKAIKDNDTNETDVISHSNVYAEDNQNMSFSSWEGSFMRCFSEMDEDLAKNIDTKGFRGGSTAVTVIKQEDELIIGNLGDSRAVLCRRADDNNLVPVQLTVDLTPDIPSEALRIFNCGGRIFSTKQDPSVNRIWRSNGDRPGLAMARAFGNFCLKDYGLISVPDLSYRKLTKQDEFVVLASDGVWDVLTNSEVINIVASAPKRSMAAKLLVNHAVQAWRRTCVLTVDDCTAICLFLKDXTVLIQSXSDGLRSPGFGCNVAYPCYAANRRRRNSGADDIAEAIHRMVDAMQTPVTAQLRTAIAPVRVPTVEDFLHHKPAEFNGKASSDEADAWLRKCEKIFKVMNCPDEQKLLFATYLLNDDVEYWWTGMQQQMQTRDEQVELTSFRTQFLEKYFPDTARQDREAKFLALQ 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01316 506 PANTHER PROTEIN PHOSPHATASE 30 330 IPR015655 GO:0004722|GO:0006470
Viun10g01316 506 Gene3D - 26 335 IPR036457 -
Viun10g01316 506 CDD PP2Cc 31 332 IPR001932 -
Viun10g01316 506 ProSiteProfiles PPM-type phosphatase domain profile. 31 332 IPR001932 -
Viun10g01316 506 SMART PP2C_4 25 330 IPR001932 -
Viun10g01316 506 SUPERFAMILY PP2C-like 30 334 IPR036457 -
Viun10g01316 506 Pfam Protein phosphatase 2C 89 312 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01316 Viun-Chr10 25362358 25371462 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01316 22 336 PP2C-type Phosphatase Gene Family AT1G16220 46.012 9.11e-103 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01316 - - vun:114165448 1026.54