Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01308 ATGACGCGTTCTCTGTTTCTCTTTCATTTTCTTGTTCTCATATTTCACGTTTTGTTCAGTTTCATTCCGGTGCTTTCACTCTCCTCCGACGGCCTCGCGCTTCTCGCTCTAAAGTCCGCCGTTGACCAGCCCTCCTCCGCTTTCTCCGACTGGAACGACGGCGACGACACGCCCTGCGCCTGGTCAGGAATCGTTTGCGCCAACATCTCCGGCGAGGAGGACCCCCGCGTGGTCGGAATCTCCCTCGCCGGAAAATCCATCTCCGGCTACCTCCCGTCAGAGCTCGGCACGCTGCGCTTCCTCCGCCGACTCAACCTCCACGACAACGCCTTCTCCGGCGTCCTCCCAGCGCAGCTCTCCAACGCTACCGCACTCCACAGCCTCTTCCTCCACCGCAACAACCTCTCCGGCCCCATCCCTCTCTCCCTCTGTAGCCTCCCACGCCTCCAAAACCTCGACCTCTCTGAAAACGCATTCTCCGGCCACATCCCCGACCACCTAGGAAACTGCAAGAACCTCCAGCGACTTATCGTAGCCGGCAACAGATTTTCGGGTGAGATTCCCGCCGGAGTGTGGCCGGAACTTCAGAACCTCCTCCAACTCGACCTGTCCGCGAACGAGTTAACCGGTTCAATCCCTGACGAAATTGGAACCCTAGTTTCCCTCTCGGGCACGCTGAACCTCTCTTTTAACCACCTCTCCGGTAAGATTCCGGCGTCGCTGGGAAAATTGCCGGCGACGGTGAGCTTCGATTTCAAAAACAACAACCTCAGTGGAGAAATTCCCCAAACGGGGTCGTTTTCAAACCAAGGTCCCACGGCGTTCCTTGGAAATCCTAACCTATGCGGGTTTCCTCTTAGAAAATCATGTTCCGGTTCGGACCGGGATTTTTCTCCCGGTTCGGATCAAAACAAACCGGTCCACCGGTCAAAGGGGTTAAGCCCCGGTTTAATTATTTTAATCTCCGCGGCTGATGCTGCTGTTGTGGCCTTCATTGGGCTTGTGATTGTTTATATCTATTGGAAGAAAAAGGATGATGAGAATGCGTGTAGTTGCATTAGGAGAAGAAAGTTTGGCGAAGAGAAAGGGAGTGCGTGTTTGTGTGGTGGATTCCCATGCGTTAGTGGGGAGAAAAGTGATGACGATGATGATGAAGATTATGAGGTGGAGGGGGCTGAGGGTGAGGGTGAAGGGGAATTGGTGAGGATTGATAAGGGATTGAATTTTGAACTTGATGAGTTGTTAAGGGCTTCTGCCTACGTGTTGGGGAAGAGTGGGTTGGGAATTGTGTATAAGGTGGTGTTGGGGAATGGGGTACCTGTGGCTGTGAGGAGGCTGGGAGAGGGAGGGGAACAGAGGTACAAAGAGTTTGCTGCAGAGGTTATGGCCATTGGGAAGGTCAAGCACCCTAATGTTGTAAGGTTGAGGGCTTACTATTGGGCACATGACGAGAAGCTTCTCATCAGTGATTTCATCTCCAATGGCAATCTGACACATGCCCTTAGAGGGAGAAACGGTCAACCATCTACAAATCTTTCATGGTCCACCCGGCTGAAAATCGCAAAAGGAACAGCGAGGGGCTTGGCGTATCTCCACGAATGCAGCCCAAGAAAGTTCGTCCATGCTGACATCAAACCCTCCAACATTCTACTTGACAACGACTTCCAACCCTTCATTTCTGATTTCGGCCTGAACCGTCTGATCAGCATCACCGGCAACAACCCCTCCACCGGTGGATTCATGGGTGGAGCTCTTCCTTACATGAAGTCTTCCCAGAAAGAGAGAACCGACAATTACAAAGCCCCTGAGGCTCGTGTCCCTGGCAGCAGACCCACCCAGAAATGGGACGTGTACTCATTTGGGGTTGTGTTGCTTGAAATACTAACTGGGAGGTCACCGGAATCATCTCCCACCACATCAACTTCCATGGAAGTCCCTGACTTGGTAAGGTGGGTGAGGAAAGGGTTCGATCAAGAAAGCCCGTTGTCTGAGATGGTTGATCCATCGCTGCTCCAAGAAGTGCGTGTTAAGAAAGAGGTGCTGGCTGTGTTTCACGTAGCTTTGGCTTGCACTGAAGGAGACCCTGAGGCTCGGCCAAGGATGAAAACTGTGTCTGAAAATCTTGATAAGGTTGGAACGTAA 2142 0.5243 MTRSLFLFHFLVLIFHVLFSFIPVLSLSSDGLALLALKSAVDQPSSAFSDWNDGDDTPCAWSGIVCANISGEEDPRVVGISLAGKSISGYLPSELGTLRFLRRLNLHDNAFSGVLPAQLSNATALHSLFLHRNNLSGPIPLSLCSLPRLQNLDLSENAFSGHIPDHLGNCKNLQRLIVAGNRFSGEIPAGVWPELQNLLQLDLSANELTGSIPDEIGTLVSLSGTLNLSFNHLSGKIPASLGKLPATVSFDFKNNNLSGEIPQTGSFSNQGPTAFLGNPNLCGFPLRKSCSGSDRDFSPGSDQNKPVHRSKGLSPGLIILISAADAAVVAFIGLVIVYIYWKKKDDENACSCIRRRKFGEEKGSACLCGGFPCVSGEKSDDDDDEDYEVEGAEGEGEGELVRIDKGLNFELDELLRASAYVLGKSGLGIVYKVVLGNGVPVAVRRLGEGGEQRYKEFAAEVMAIGKVKHPNVVRLRAYYWAHDEKLLISDFISNGNLTHALRGRNGQPSTNLSWSTRLKIAKGTARGLAYLHECSPRKFVHADIKPSNILLDNDFQPFISDFGLNRLISITGNNPSTGGFMGGALPYMKSSQKERTDNYKAPEARVPGSRPTQKWDVYSFGVVLLEILTGRSPESSPTTSTSMEVPDLVRWVRKGFDQESPLSEMVDPSLLQEVRVKKEVLAVFHVALACTEGDPEARPRMKTVSENLDKVGT 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01308 713 CDD STKc_IRAK 422 710 - -
Viun10g01308 713 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 166 711 IPR046959 -
Viun10g01308 713 FunFam Leucine-rich repeat receptor-like protein kinase 197 292 - -
Viun10g01308 713 SUPERFAMILY Protein kinase-like (PK-like) 421 706 IPR011009 -
Viun10g01308 713 FunFam Os07g0541700 protein 494 582 - -
Viun10g01308 713 SUPERFAMILY L domain-like 28 287 - -
Viun10g01308 713 Gene3D Transferase(Phosphotransferase) domain 1 492 713 - -
Viun10g01308 713 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 27 192 - -
Viun10g01308 713 ProSitePatterns Serine/Threonine protein kinases active-site signature. 539 551 IPR008271 GO:0004672|GO:0006468
Viun10g01308 713 Gene3D Ribonuclease Inhibitor 192 292 IPR032675 -
Viun10g01308 713 ProSiteProfiles Protein kinase domain profile. 416 713 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g01308 713 FunFam Leucine-rich repeat receptor-like protein kinase 399 491 - -
Viun10g01308 713 Pfam Protein kinase domain 421 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g01308 713 SMART serkin_6 420 706 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g01308 713 Gene3D Ribonuclease Inhibitor 27 191 IPR032675 -
Viun10g01308 713 Pfam Leucine rich repeat N-terminal domain 28 66 IPR013210 -
Viun10g01308 713 Gene3D Phosphorylase Kinase; domain 1 407 491 - -
Viun10g01308 713 SMART LRR_typ_2 146 170 IPR003591 -
Viun10g01308 713 SMART LRR_typ_2 98 121 IPR003591 -
Viun10g01308 713 SMART LRR_typ_2 195 219 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01308 Viun-Chr10 25190338 25194861 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01308 23 711 Receptor kinase-like Gene Family AT1G67510 68.028 0.0 940
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Viun10g01308 Pkinase 2.7e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01308 - - var:108346287 1334.7