Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01281 ATGGCTCCAAAAATACTCTTTGGCCTCCTCACTTTTCTCTTTCTCTTAGTTTCTTCCACTGCTTTTTCCTTCACATTCCATGGCTTCAATGAAAGCAATATCACCCTTGAAGAGAAGGCAAAGATTGACAAGCAAGGTAGACTTGAGCTTACAAGAAGAGAAAACAATATTGTTGGCCATGCATTCTACAATGAATCCATCAAAATACTTGACAAAAATACTTCAGTCCCCAAGCCAAAGGTTTTCTCCTTCAGTACTTTCTTTGTTTTCTCAATTGTGTCACCAAGCTCTGGTCCTGGTGGCTTTGGTCTTGCCTTCACCATAGCTCCTTCAACACAGTTCCCACAAGCTGAAGGTGGCCATCTTCTTGGTCTCTTCAACTCTTCCAATGATATGAACTCCTCAAATCAAATCTTGGTGGTTGAGTTTGATACGGTGAATGGCTACAAAGATGCCACTGACACTGTGGGAAACCATGTGGGGGTGAACAAAAATGGCATGTCCTCAAATATATCTGAGCCTGCTGCTTACTTTGAAGATGGCAAAAAGGAAGAGTTCAACATGGAGATGGCTGATGCTGTTTGTGTTTGGATTGAATATGATGGTGAAACAGATATACTGAATCTCACAATAGCCTCTTATCCGAAATCAAAACCAAGCAAACCTCTTATATCTCAGCGTGTTGGCCTTGAGTCTGTCATGAAGGAGAGCATGTTTTTTGGTTTCTCTGCATCAACAGGTAAGAGAAAATCAAGTGCTCATTATATTCTAGGGTGGAGTTTTGCAGTGAATGGGGTTGCCCCTCAACTAGATTATGCACTACTTCCAAAGCCACCACCAAAGGAGAAACACTCAAACACTTTTCCTTGGATCAAGGTTGTAATTGGCATCTTGTCTGCTCTGACATTTACCTTGTTGTGTCTTTTGCTTTTTGTGACACTCTATAAGAGATACATGGTGTTTGAAACTCTTGAGGATTGGGAAATGGATTGTCCTCATAGGTTCAGATACAGAGATCTTCACCTAGCAACAAAGGGGTTCACAGAGAGCCAACTAATTGGAGTTGGAGGCTTTGGTTCTGTGTACAAAGGGGTGTTACCCAGCACAGGATCCGAGGTTGCTGTTAAAAGGATCCTGAGAACTCCAGCCAAAGGAATGAGGGAATTTGCAGCTGAGATTGAAAGCTTAGGAAGATTGAGGCACAAGAATTTGGTGAACCTTCAAGGGTGGTGCAAGCACAAGAATGATCTCCTCTTGGTTTATGATTACATTCCAAATGGGAGCCTTGACTCTCTCCTATTCAGCAAAAGCTTTGTCTTGGATTGGGATCAGAGATTCAGAATTCTGAAAGGTGTAGCTGCTGGGTTGTTGTATCTGCATGAAGAATGGGAGCAAGTGGTGATACACAGAGATGTGAAATCAAGCAATATTCTTATTGATGGGGACTTCAATGCTCATTTGGGTGACTTTGGACTAGCAAGGCTTTATAGCCATGATCAAGTTTCACACACAACAAGTGTGGTTGGAACAATTGGGTATATTGCACCAGAGTTAACTAGGACAGGAAAAGCATCTACAAGCTCTGATGTGTATGCATTTGGGGTCCTTCTTCTTGAAATGGTTGCAGGAACAAGACCAGTTGGTTCATCAGGTAATTTTTTCTTGGTGGATTGGGTTCTTGAAAATTCCCATCTGGGTCAGATTCTTGAAGTGGTTGATCCAAAGTTAGATTCAGTTTATGATGAAGAGGAAGCAGAATTGGTTCTGAAACTGGGTCTGCTGTGTACTCAAAACAAAGCTGAGTATAGACCCTCTATCCAACAAGTGACTAGGTACCTAAACTTTGATGATCCTTTTCCTGATATCTCTGATTGCAGATACTATGATTCTCAAAGTAGCACGACAAGCTTAGGGTTTTCAAAAGCCATGTCTACGGGTGAGATTTCATCATCCTCGTACAGTTTACCCTCCATTGACAGGAGTACAATCTCCATAGAAGCTGGCAGATAG 2010 0.4194 MAPKILFGLLTFLFLLVSSTAFSFTFHGFNESNITLEEKAKIDKQGRLELTRRENNIVGHAFYNESIKILDKNTSVPKPKVFSFSTFFVFSIVSPSSGPGGFGLAFTIAPSTQFPQAEGGHLLGLFNSSNDMNSSNQILVVEFDTVNGYKDATDTVGNHVGVNKNGMSSNISEPAAYFEDGKKEEFNMEMADAVCVWIEYDGETDILNLTIASYPKSKPSKPLISQRVGLESVMKESMFFGFSASTGKRKSSAHYILGWSFAVNGVAPQLDYALLPKPPPKEKHSNTFPWIKVVIGILSALTFTLLCLLLFVTLYKRYMVFETLEDWEMDCPHRFRYRDLHLATKGFTESQLIGVGGFGSVYKGVLPSTGSEVAVKRILRTPAKGMREFAAEIESLGRLRHKNLVNLQGWCKHKNDLLLVYDYIPNGSLDSLLFSKSFVLDWDQRFRILKGVAAGLLYLHEEWEQVVIHRDVKSSNILIDGDFNAHLGDFGLARLYSHDQVSHTTSVVGTIGYIAPELTRTGKASTSSDVYAFGVLLLEMVAGTRPVGSSGNFFLVDWVLENSHLGQILEVVDPKLDSVYDEEEAELVLKLGLLCTQNKAEYRPSIQQVTRYLNFDDPFPDISDCRYYDSQSSTTSLGFSKAMSTGEISSSSYSLPSIDRSTISIEAGR 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01281 669 Pfam Protein kinase domain 347 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g01281 669 FunFam serine/threonine-protein kinase PBS1-like 319 423 - -
Viun10g01281 669 SMART serkin_6 347 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g01281 669 CDD lectin_legume_LecRK_Arcelin_ConA 22 265 IPR001220 GO:0030246
Viun10g01281 669 CDD STKc_IRAK 353 614 - -
Viun10g01281 669 SUPERFAMILY Concanavalin A-like lectins/glucanases 21 280 IPR013320 -
Viun10g01281 669 FunFam L-type lectin-domain containing receptor kinase V.9 21 266 - -
Viun10g01281 669 ProSiteProfiles Protein kinase domain profile. 347 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g01281 669 ProSitePatterns Protein kinases ATP-binding region signature. 353 384 IPR017441 GO:0005524
Viun10g01281 669 Pfam Legume lectin domain 23 271 IPR001220 GO:0030246
Viun10g01281 669 FunFam L-type lectin-domain containing receptor kinase S.4 424 626 - -
Viun10g01281 669 SUPERFAMILY Protein kinase-like (PK-like) 330 619 IPR011009 -
Viun10g01281 669 Gene3D - 20 270 - -
Viun10g01281 669 PANTHER - 21 615 - -
Viun10g01281 669 ProSitePatterns Serine/Threonine protein kinases active-site signature. 467 479 IPR008271 GO:0004672|GO:0006468
Viun10g01281 669 Gene3D Phosphorylase Kinase; domain 1 317 423 - -
Viun10g01281 669 Gene3D Transferase(Phosphotransferase) domain 1 424 618 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01281 Viun-Chr10 24503594 24505774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01281 24 638 Receptor kinase-like Gene Family AT5G01560 52.133 0.0 629
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Viun10g01281 Pkinase 2.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01281 - - vra:106770487 1165.98