Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01277 ATGGGAGAAAGCCGAGTCTCCCAATGTTCCAAGACAAGCCCTTCTAACATTGATGAAGAAGAGTGTGAAAGCCATGCGAATGAAGATCAAAGCAAGCAAAACAACAATGGAGGAAGCTCAAGCAACAGCACAGTGGAAGAGAGTGAGAAAAAGATTAGACCTTATGTTAGATCCAAGTTACCGAGGCTTCGATGGACCCCTGATCTTCATCTTCGCTTTGTTCATGCTGTTCAACGACTTGGAGGACAAGAGAGAGCAACACCTAAACTGGTTCTTCAATTGATGAACATGAAAGGTTTGAGTATTGCCCATGTCAAGAGTCATTTGCAGATGTTTAGGAGCAAAAAGATCGATGACCGAAATCAAGTATTCTCCGATCATACCAGTCTTGTTGAAATTGGAGACAAAAATATTTATAACCTTAGCCAACTTTCCATGCTTCAAGGATACAATCCCAGTCAAAGTTCGTCCTACACCTACACAAACAATAACTATCCAAGTTACGGATTCGGGAATGGTTCTTTTGGTAGCTACGAAAAACTTGTGCACAGACCTTTCGATTGGTCCAATGGAATGTCTCGGGCAAGTTCATCCATTTCTGGTGAACAATCAACAAGCAAAACCCGTGAACCAAAATATGAACTTTTCTCATTTGGTGCTTACGAAACTCTATGCACAAGATTTAGCCACGTTGATCACACTCCATCAAACAGTATTATTCAACAGAGAGCACAAAACCTCATGCCTATAAATCCAACAACAGAATTGAAGACACTGAAAAGGAAGGCTCAAGATTCATCGCTTGATTTGGATCTGTCGCTGAAACTAAACACAAAGATGGATGATGAAGGAACGAAATTTGAGGACCATGATGTTCGTAGCAACCTGTCTCTGTCGTTGTGCTCTCAATCCTCCTCTTCCAATCTCAGCATCAGGTTGAAGGAAGCACAAGATCGATGTGAGGAACACGGGAAAAGGGCCAGTACTCTAGATCTGACTATATGA 1005 0.4179 MGESRVSQCSKTSPSNIDEEECESHANEDQSKQNNNGGSSSNSTVEESEKKIRPYVRSKLPRLRWTPDLHLRFVHAVQRLGGQERATPKLVLQLMNMKGLSIAHVKSHLQMFRSKKIDDRNQVFSDHTSLVEIGDKNIYNLSQLSMLQGYNPSQSSSYTYTNNNYPSYGFGNGSFGSYEKLVHRPFDWSNGMSRASSSISGEQSTSKTREPKYELFSFGAYETLCTRFSHVDHTPSNSIIQQRAQNLMPINPTTELKTLKRKAQDSSLDLDLSLKLNTKMDDEGTKFEDHDVRSNLSLSLCSQSSSSNLSIRLKEAQDRCEEHGKRASTLDLTI 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01277 334 MobiDBLite consensus disorder prediction 1 53 - -
Viun10g01277 334 MobiDBLite consensus disorder prediction 1 15 - -
Viun10g01277 334 SUPERFAMILY Homeodomain-like 60 115 IPR009057 -
Viun10g01277 334 MobiDBLite consensus disorder prediction 29 45 - -
Viun10g01277 334 FunFam Myb family transcription factor 59 117 - -
Viun10g01277 334 NCBIfam myb-like DNA-binding domain, SHAQKYF class 61 116 IPR006447 GO:0003677
Viun10g01277 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 117 IPR017930 -
Viun10g01277 334 Gene3D - 60 117 - -
Viun10g01277 334 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 23 251 IPR044847 GO:0000976|GO:0006355|GO:0010158
Viun10g01277 334 Pfam Myb-like DNA-binding domain 63 111 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01277 Viun-Chr10 24393975 24395991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01277 27 118 G2-like Transcription Factor Family AT2G42660 61.957 8.65e-34 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Viun10g01277 Myb_DNA-binding 7.8e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01277 - - gmx:102660246 429.483