Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01266 ATGGATCACACTCACCCTGCTTCATCTGACGCAGGATCCTCTTCGAAGACTTCAAAGAGTGCTAAGAAATGCAAAGGAGTGAGGCTCTCCACCGATCCTCAGAGCGTGGCAGCAAGAGAACGAAGGCACAGAATCAGTGACAGGTTCAAGATCTTGCAGAGCATGGTTCCTGGTGGAAGCAAGATGGACACAGTGTCCATGTTGGAGGAAGCCATTCAGTATGTGAAGTACCTCAAAACCCAGATTTGGCTCCACCAAACCATGATCAATTTCTTAGATGACAACGGCTCACTTTCCCCTATGTACCTTGCTGAATTCTACTTTCCTTCTGACCCTTCTGAACAGTTCATTTTCCCTCAGCAAAATCCACCACTTGATCATGACATGCACAATTTTCCTCATCTTCCACCACCACAATGCAGCTTCCATGGTGAAGACCCCACCTACTTCGATGCCTCTTTCAAATATTGGCCTGCTTAA 480 0.4688 MDHTHPASSDAGSSSKTSKSAKKCKGVRLSTDPQSVAARERRHRISDRFKILQSMVPGGSKMDTVSMLEEAIQYVKYLKTQIWLHQTMINFLDDNGSLSPMYLAEFYFPSDPSEQFIFPQQNPPLDHDMHNFPHLPPPQCSFHGEDPTYFDASFKYWPA 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01266 159 SMART finulus 35 84 IPR011598 GO:0046983
Viun10g01266 159 FunFam Transcription factor LAX PANICLE 32 95 - -
Viun10g01266 159 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 6 121 IPR045843 GO:0003700|GO:0006355
Viun10g01266 159 Pfam Helix-loop-helix DNA-binding domain 39 79 IPR011598 GO:0046983
Viun10g01266 159 MobiDBLite consensus disorder prediction 1 38 - -
Viun10g01266 159 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 34 91 IPR036638 GO:0046983
Viun10g01266 159 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 29 78 IPR011598 GO:0046983
Viun10g01266 159 Gene3D - 33 87 IPR036638 GO:0046983
Viun10g01266 159 CDD bHLH_AtIND_like 30 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01266 Viun-Chr10 23903992 23904847 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01266 23 82 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 60.000 1.10e-21 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun10g01266 HLH 9.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01266 - - pvu:PHAVU_010G073400g 253.832