Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01239 ATGAAGTTTATTCTTTTTCTAATGAGTTGCATAGTTCATAAACTATTTTTACCTTCTGAAACAGTTTTCATAGCAGCAGAGACTTCATCCCTTACACAATCCCAATCTCTCAGTAACAGAGAGACCTTAGTTTCCCCCGGTGGAATTTTTGAACTCGGTTTCTTCAACCTAGGAAATCCCAAAAAAAACTACCTCGGAATCTGGTATAAGAATATCCCTGTACAAAACATAGTATGGGTTGCAAACAGTGCCATCTCAATCAAGGACTCTTCAGCCATCTTGAAATTAAACAGTTCTGGCAATTTGGTCCTCACACAAAACAACACGGTTGTCTGGTGCACAAGTTCTGCAGAAAAGGCACAGAATCCAGTGGCAGAGCTCTTGGATTCTGGAAATCTTGTGATAAGAGATGAAAATGAAACTAAGGCAGAGACATATTTGTGGCAAAGCTTTGATCATCCATCTAATACATTGGTGCCAGGAATGAAGCTTGGATGGGACCTCAAAAGAAATCTTAATATTTTCCTGAAAGCTTGGAAAAGTGATGATGATCCGACACCAGGAGACTTATACTGGGGCGTTGTTCTGCATCCTTATCCTGAGATGTATATGATGAAGGGACCAAAAAAGCACTGGAGACTTGGGCCATGGAATGGTTTGCGTTTCAGTGGAAGGCCACTTAACACCATTCACCGTTACGAGTTTGTCTCCAACCAGGAAGAGGTTTATTTCAGATGGAGCCTCAAGGAAACTAATTCAGTGACAAAAGTGGTACTGAACCAAACTGCACAAGTGCGTCAACTTTATGTATGGTCAGAGAAATCATGGATTTGGTCTTCAACTATGCCAGATGACCACTGTGATCAATATGGAGTTTGTGGATCCAATACTTATTGCACCACTTCTGCATCAGCAACTTGTGGTTGCTTAAAAGGATTCAAGCCTAAGTCTCCTGAGAAATGGAACTCAATGGAATGGTCCCAAGGATGTGTCCTCACACATCCACTTAGCTGCAAAGACAAGTTGGGTGATAGTTTTTTCTTCATGGATGGCTTGAAAGTGCCGGATACTGAATATACGTTTGTGGATGAGACTATTGATTTAAAACAATGCAGAGCCAAGTGCATGAATAATTGTTCCTGCATGGCATATACCAATTTAAATATAAGTGGAGCAGGCAGTGGCTGTGTCATGTGGTTTGGTGATTTATTTGACATCAAACTCTATTCAAATCCAGAAATGGGGCAGCGCCTATATATAAGGTCCAGTCCTACAAAATCAGAGTCTATCAGTAACAAGAACCCTGCAATAATATATGTAACCTCCATTGCTGCAACTTGTGGAGTGATGCTTGCTATTTATTTTGTCTACAGAAGGAAAACTTCAGATAAGTCAAAGACAAAAGAGGACATTGAAAGACAGCTACGTGTTCTGGATGTGACTTTGTTTGATCTTTCTTCAATCAGAACCGCCACTAACAATTTTTCATTGAACAATAAGATTGGACAGGGTGGTTTTGGACCTGTATATAAGGGAAAATTAGTGGATGATCGTGAAATTGCTGTGAAGAGACTTTCACAAAGCTCTGGACAAGGAATAACTGAGTTCATGACAGAAGTGAATGTGATAGCAAAGCTACAACACCGAAATCTTGTAAAGCTCCTTGGTTGTTGCTTTCAAGGAAAAGAAAAGTTACTAGTATATGAATACATGGTTAATGGCAGCCTAGACACCTTCCTTTTCGATAAAACAAAAGGTGAATTGCTGGAATGGCCCCAACGCTTGCACATAATATTTGGGATTGCCAGAGGGCTTTTGTATCTACATCAAGATTCCCAGTTGAGGATTATTCACAGAGATCTGAAAGCAAGTAATGTTTTACTTGACCAAAAGTTAAATCCAAAAATATCAGATTTTGGAATGGCCAAGGCTTTTGGAGGAGACCAAATAGAAGGAAACACAAATAGAGTTGTTGGAACCTATGGATACATGGCCCCAGAATACGCTGTTGATGGACTATATTCAATCAAATCGGACGTTTTCAGCTTTGGTATTTTGTTGTTGGAGATTATATGTGGCAACAAAAATAGAGCTCTCTGTCATGGAAACCAAACTCTGAACCTTGTTGGCTATGCATGGACACTTTGGAAAGAGCAAAATGCTTTAGAATTGATTGACTCAAGCATAAAAAGCTCATGTGTTGTCTCAGAAGTACTTCGATGCATCCATGTTAGTCTGTTGTGCGTGCAACAATACCCGGATGATAGGCCTACCATGACATCGGTTATTCAAATGTTAGGGAGTGAAATGAAGCTGGTTAACCCAAAAGAGCCTGGTTTCTTTCCCACGAAGATTTCGGACCAAGGAAAATTAAGCTCAAATCTAAAACAAGAGACTTCAAATGATGAATTAACCATTACCTCATTAAAGGGCCGGTGA 2439 0.3993 MKFILFLMSCIVHKLFLPSETVFIAAETSSLTQSQSLSNRETLVSPGGIFELGFFNLGNPKKNYLGIWYKNIPVQNIVWVANSAISIKDSSAILKLNSSGNLVLTQNNTVVWCTSSAEKAQNPVAELLDSGNLVIRDENETKAETYLWQSFDHPSNTLVPGMKLGWDLKRNLNIFLKAWKSDDDPTPGDLYWGVVLHPYPEMYMMKGPKKHWRLGPWNGLRFSGRPLNTIHRYEFVSNQEEVYFRWSLKETNSVTKVVLNQTAQVRQLYVWSEKSWIWSSTMPDDHCDQYGVCGSNTYCTTSASATCGCLKGFKPKSPEKWNSMEWSQGCVLTHPLSCKDKLGDSFFFMDGLKVPDTEYTFVDETIDLKQCRAKCMNNCSCMAYTNLNISGAGSGCVMWFGDLFDIKLYSNPEMGQRLYIRSSPTKSESISNKNPAIIYVTSIAATCGVMLAIYFVYRRKTSDKSKTKEDIERQLRVLDVTLFDLSSIRTATNNFSLNNKIGQGGFGPVYKGKLVDDREIAVKRLSQSSGQGITEFMTEVNVIAKLQHRNLVKLLGCCFQGKEKLLVYEYMVNGSLDTFLFDKTKGELLEWPQRLHIIFGIARGLLYLHQDSQLRIIHRDLKASNVLLDQKLNPKISDFGMAKAFGGDQIEGNTNRVVGTYGYMAPEYAVDGLYSIKSDVFSFGILLLEIICGNKNRALCHGNQTLNLVGYAWTLWKEQNALELIDSSIKSSCVVSEVLRCIHVSLLCVQQYPDDRPTMTSVIQMLGSEMKLVNPKEPGFFPTKISDQGKLSSNLKQETSNDELTITSLKGR 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01239 812 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 458 570 - -
Viun10g01239 812 ProSitePatterns Serine/Threonine protein kinases active-site signature. 616 628 IPR008271 GO:0004672|GO:0006468
Viun10g01239 812 SMART blect_4 34 154 IPR001480 -
Viun10g01239 812 Pfam PAN-like domain 340 406 IPR003609 -
Viun10g01239 812 SUPERFAMILY alpha-D-mannose-specific plant lectins 77 185 IPR036426 -
Viun10g01239 812 Gene3D Phosphorylase Kinase; domain 1 456 570 - -
Viun10g01239 812 Pfam Protein tyrosine and serine/threonine kinase 496 766 IPR001245 GO:0004672|GO:0006468
Viun10g01239 812 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 24 151 - -
Viun10g01239 812 Gene3D Transferase(Phosphotransferase) domain 1 571 777 - -
Viun10g01239 812 SUPERFAMILY Protein kinase-like (PK-like) 473 766 IPR011009 -
Viun10g01239 812 CDD STKc_IRAK 501 766 - -
Viun10g01239 812 ProSiteProfiles Bulb-type lectin domain profile. 28 148 IPR001480 -
Viun10g01239 812 Pfam S-locus glycoprotein domain 212 317 IPR000858 GO:0048544
Viun10g01239 812 PIRSF SRK 1 812 IPR024171 GO:0004674
Viun10g01239 812 CDD B_lectin 41 154 IPR001480 -
Viun10g01239 812 Gene3D - 22 152 IPR036426 -
Viun10g01239 812 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 15 757 - -
Viun10g01239 812 SMART ntp_6 341 422 IPR003609 -
Viun10g01239 812 ProSiteProfiles Protein kinase domain profile. 495 773 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g01239 812 SMART serkin_6 495 773 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g01239 812 Pfam D-mannose binding lectin 77 180 IPR001480 -
Viun10g01239 812 CDD PAN_AP_plant 334 421 - -
Viun10g01239 812 ProSiteProfiles PAN/Apple domain profile. 338 423 IPR003609 -
Viun10g01239 812 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 571 774 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01239 Viun-Chr10 23588627 23593317 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01239 421 782 Receptor kinase-like Gene Family AT4G23190 50.272 1.68e-120 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun10g01239 PK_Tyr_Ser-Thr 3.9e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01239 - - gmx:100808227 1300.03