Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01238 ATGGACATGATGGACGTGGATGAAACTTCTGCACCCAGAGAGGGCAAGCCCGTTTTGGTGATCCTGGTGGGAGCACCTGGGAGTGGCAAATCCACCTTCGGCGAAGATGTAATGCGTTCCTCTACTCGACACTGGGTCCGCGTTTGCCAGGACACTATTGGAAATGGCAAAGCAGGAACTAAAGCTCAGTGCCTAAGCAGTGCAACTAGTGCATTGAAGGAAGGGAAGAGTGTATTTATTGACAGGTGCAATCTTGTCAGAGAACAGCGGTCAGAATTTATACAGCTTGGTGGTGGACTCCAAATAGATGTCCATGCAGTTGTACTTGATCTTCCTGCTAAGCTCTGTATTTCTCGATCAGTCAAACGAACTGGGCATGAAGGAAATTTGCAGGGTGGAAGAGCTGCTGCGGTTGTGAATAGAATGCTTCAACATAAAGAGCTTCCCAAATTAAGTGAAGGCTTTAACCGGATAACATTTTGTCAGAATGAGAATGATGTAAAAAATGCTATTAATACATACAGCTCACTTGGGCCACTGGATAGTCTTCCACATGGTTGCTTTGGCCAGAAGAATACAGATTCCAAAATTCAAGTTGGTATAATGAAGTTCCTAAAAAAAGCAGAGGTCCCACTTGCTGCTGCATCTACAACGAGTGGCACTGAAGACCCTACTTCCCAGACTCCGAGAAATAATTCATACTTCAAAAACAAGGAAACACTTTCCTCAATTTCAGATAATGCCAACTTAGAGACAAAGGAAGTAGAAGGGCAAGAAGTTGGTTCTGCTGATTCCCATGCCAATCAAGTTTGTCCGGATGATATTCCAACTCTGGCATTTCCCTCTATTTCAACATCTGATTTCCAATTCAACCTTGAGAAGGCAGCTGATATTATTGTTGAGAAGGTTGCAGAGTTCTCAAATAAGTTTAGGAATGCCAGACTTGTTCTTGTTGACTTATCTCATAAGTCAAAGATTTTGTCCTTAGTTAAAGCCAGAATCGCAGAAAAAAACATGGACACGCAAAAGTTTTTTACCCATGTTGGGGACATTACTCATCTTTATTCCAGGGGAGGTTTGCGATGCAATGCCATTGCTAATGCTGCCAACTGGAGGTTGAAACCTGGAGGTGGAGGTGTTAATGCAGCAATTTTTAATGCTGCAGGTCCTGAACTGGAGTCTGCAACAAAAGATAAAGTAAAATCTCTATCACCTGGAAATGCTGCTGTTGTCCCTCTGTCTTCATCTTCTCCTTTGTTCACAAGAGAGGGTGTAACCCATGTAATACATGTTCTTGGACCTAATATGAACCCACAAAGACCAAATTATCTAAATAATGATTATAATAAAGGCTGCAAAATTCTCGAAGATGCTTATACTTCACTCTTTGATGGTTTTGCATCTATTGTGAGGAACCAGCCAGGGATACCAGTTGGAAAAAGTGAAAAGGTTGAAAGGAAGTCATTGGAGTTGCCGGTTCAGTCTGATTGTTCTGCCAGAAAATATTTTACAAGTACTGAGCAAAAGAGTAAGAGAAGTGATGATCATGGTTCAGAGAAAAGCAAGAAATGCAAGGGAACTCTGGATGGCTTAGGATTGGCCTTTACTGATTCTAAGGATGAAAAGGTAGATTCAGAGCAGAGAAGAACCGAGAGGAGCAGGAGTAAGGCTTGGGGATCATGGGCTCAAGCTCTTCACCAAATAGCTATGCATCCTGAAAAGCATAAGGGTGATTTGCTTGAAATTTCCGATGATGTTGTTGTATTAAATGATATCTATCCAAAGGCACAGAAGCATGTTCTGGTGTTGGCACGAACTGGGGGTCTTGACTGCCTCGCTGATGTCCAAAAGGAGCAACTTCAGTTATTGAAGAAGATGCATGATGTGGGTGTAAAGTGGGCTGAGAAGTTCTTGACCGAGAATGCTTCTCTGGTATTTCGACTTGGATATCACTCGGTACCATCGATGCGACAACTACATTTACATGTTATTAGCCAGGACTTTGAATCAACACAATTAAAGAATAAGAAGCACTGGAACTCGTTTAACACTGCCTTCTTTCGTGACTCGGTTGATGTAATGGATGAAGTCTCTAGTGATGGGAAGGCAACGTTGAAAGATGATGACAAGCTACTCTCTATGGAGTTGAGGTGCCACAGATGTAGAAGTGCCCATCCAAACATACCCCGGTTAAAATCTCATATCAGCAGCTGCCAATCTCCCTTTCCCGCTTACCTACTTCAGAATGGACGTTTAGTGCATGCTCCGGGGGAACCTCGCAACAGTGTCCAGTAG 2295 0.4292 MDMMDVDETSAPREGKPVLVILVGAPGSGKSTFGEDVMRSSTRHWVRVCQDTIGNGKAGTKAQCLSSATSALKEGKSVFIDRCNLVREQRSEFIQLGGGLQIDVHAVVLDLPAKLCISRSVKRTGHEGNLQGGRAAAVVNRMLQHKELPKLSEGFNRITFCQNENDVKNAINTYSSLGPLDSLPHGCFGQKNTDSKIQVGIMKFLKKAEVPLAAASTTSGTEDPTSQTPRNNSYFKNKETLSSISDNANLETKEVEGQEVGSADSHANQVCPDDIPTLAFPSISTSDFQFNLEKAADIIVEKVAEFSNKFRNARLVLVDLSHKSKILSLVKARIAEKNMDTQKFFTHVGDITHLYSRGGLRCNAIANAANWRLKPGGGGVNAAIFNAAGPELESATKDKVKSLSPGNAAVVPLSSSSPLFTREGVTHVIHVLGPNMNPQRPNYLNNDYNKGCKILEDAYTSLFDGFASIVRNQPGIPVGKSEKVERKSLELPVQSDCSARKYFTSTEQKSKRSDDHGSEKSKKCKGTLDGLGLAFTDSKDEKVDSEQRRTERSRSKAWGSWAQALHQIAMHPEKHKGDLLEISDDVVVLNDIYPKAQKHVLVLARTGGLDCLADVQKEQLQLLKKMHDVGVKWAEKFLTENASLVFRLGYHSVPSMRQLHLHVISQDFESTQLKNKKHWNSFNTAFFRDSVDVMDEVSSDGKATLKDDDKLLSMELRCHRCRSAHPNIPRLKSHISSCQSPFPAYLLQNGRLVHAPGEPRNSVQ 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01238 764 SUPERFAMILY HIT-like 556 722 IPR036265 -
Viun10g01238 764 FunFam Transcription factor bHLH140 7 176 - -
Viun10g01238 764 MobiDBLite consensus disorder prediction 505 525 - -
Viun10g01238 764 MobiDBLite consensus disorder prediction 502 525 - -
Viun10g01238 764 FunFam Transcription factor bHLH140 324 471 - -
Viun10g01238 764 Pfam C2HE / C2H2 / C2HC zinc-binding finger 683 736 IPR032566 -
Viun10g01238 764 Pfam Scavenger mRNA decapping enzyme C-term binding 568 678 - -
Viun10g01238 764 SUPERFAMILY Macro domain-like 267 317 IPR043472 -
Viun10g01238 764 SUPERFAMILY Macro domain-like 324 463 IPR043472 -
Viun10g01238 764 ProSiteProfiles Macro domain profile. 331 510 IPR002589 -
Viun10g01238 764 Gene3D - 3 176 IPR027417 -
Viun10g01238 764 FunFam aprataxin isoform X2 559 739 - -
Viun10g01238 764 Gene3D - 560 741 IPR036265 -
Viun10g01238 764 PANTHER APRATAXIN-RELATED 278 738 - -
Viun10g01238 764 SMART YBR022w_8 343 485 IPR002589 -
Viun10g01238 764 Gene3D Leucine Aminopeptidase, subunit E, domain 1 321 470 IPR043472 -
Viun10g01238 764 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 163 IPR027417 -
Viun10g01238 764 MobiDBLite consensus disorder prediction 215 268 - -
Viun10g01238 764 Gene3D Leucine Aminopeptidase, subunit E, domain 1 225 320 IPR043472 -
Viun10g01238 764 ProSitePatterns HIT domain signature. 647 665 IPR019808 -
Viun10g01238 764 Pfam Macro domain 366 449 IPR002589 -
Viun10g01238 764 MobiDBLite consensus disorder prediction 215 251 - -
Viun10g01238 764 Pfam AAA domain 19 144 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01238 14 753 C2H2 Transcription Factor Family AT5G01310 59.595 0.0 870
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01238 K10863 - gmx:100786762 1287.32