Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01202 ATGCAAATGGCTTCCACTCCCCGCACCGTCGAAGAGATCTTCAAGGATTACACCGCCCGAAGAACCGCCATCGTTCGCGCTCTCTCTCAAGATGTCGATGAATTCTACGGACTCTGTGATCCAGATAAGGAGAACTTGTGCCTCTATGGACATCCGAATGAGACTTGGGAAGTGACTTTGCCAGCGGAGGAAGTTCCGCCGGAGCTTCCGGAGCCTGCGCTTGGAATCAATTTTGCTAGGGATGGCATGAATCGCAGGGACTGGCTTTCTCTGGTTGCTGTGCACAGTGATTCGTGGCTGCTTTCTGTGGCCTTTTATCTTGGAGCTCGTCTTAACCGCAATGAAAGGAAACGTTTGTTTGGCTTGATAAATGATCTTCCTACTGTTTTTGAAGTTGTGACTGAGAGGAAGCCGGTAAAGGACAAGCCCACTGCAGACAGTGGAAGCAAATCTAGGGGCAGCACCAAGAGATCAAGTGATGGGCAAGTTAAAAGCAACCCGAAGTTCGCCGATGAAGGATATGAAGAGGAGGATGACGAGCATAGTGAAACCCTGTGTGGGAGCTGTGGTGGAAATTACAATGCAGATGAATTTTGGATTGGTTGTGACATATGTGAGAGGTGGTTCCATGGTAAATGTGTGAAGATTACCCCTGCAAAAGCTGAGAGCATAAAGCAATACAAATGTCCATCATGCAGCTTGAGGCGGGGCAGGCCCTAA 720 0.4903 MQMASTPRTVEEIFKDYTARRTAIVRALSQDVDEFYGLCDPDKENLCLYGHPNETWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFGLINDLPTVFEVVTERKPVKDKPTADSGSKSRGSTKRSSDGQVKSNPKFADEGYEEEDDEHSETLCGSCGGNYNADEFWIGCDICERWFHGKCVKITPAKAESIKQYKCPSCSLRRGRP 239
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01202 239 SUPERFAMILY FYVE/PHD zinc finger 174 237 IPR011011 -
Viun10g01202 239 CDD PHD_AL_plant 185 235 IPR044104 -
Viun10g01202 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 183 233 IPR013083 -
Viun10g01202 239 PANTHER CPG BINDING PROTEIN 6 238 IPR045104 GO:0006355|GO:0042393
Viun10g01202 239 ProSitePatterns Zinc finger PHD-type signature. 186 232 IPR019786 -
Viun10g01202 239 SMART PHD_3 185 233 IPR001965 -
Viun10g01202 239 MobiDBLite consensus disorder prediction 137 177 - -
Viun10g01202 239 Pfam Alfin 9 134 IPR021998 GO:0006355|GO:0042393
Viun10g01202 239 MobiDBLite consensus disorder prediction 148 165 - -
Viun10g01202 239 Pfam PHD-finger 186 233 IPR019787 -
Viun10g01202 239 ProSiteProfiles Zinc finger PHD-type profile. 183 235 IPR019787 -
Viun10g01202 239 FunFam PHD finger alfin-like protein 178 234 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Viun10g01202 Viun-Chr10 22025718 22029067 Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01202 4 238 Alfin-like Transcription Factor Family AT5G05610 77.542 3.19e-121 343
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Viun10g01202 Alfin 1.9e-67 No_clan
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01202 K26274 - gmx:100779170 472.241