Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01199 ATGGATTACGTACAAGAAAATGCAATAGGTTTGGAGGACATCAATTTATTAGAAGAAGATGATGATAGTGGAACTATCTTGGACGAGGAAGGTATTGATAAGGAAGACAATGAACAACATCCTGTTGATGTCATTTCTCCGTGTGTTGGGATGTATTTTGACAGTGTTGACAACGTGAAGAAATTTTACAAAGAATACGCAATTAGAAGTGGTTTCGGGACAAGAATCAGAACTTCGAGAAAAGACAATGACAATCAACTATGTTACTTCAAATTAGTGTGTTCCAGGGAGGGAAAATGTGTGTCATCCATACCACCTGAAATGAAGACACTGCCCACACAAAGAAAGCAATGTCCTACGCGCATTACTGTCGTTAGAAGAGAAGATAAGTGGATGATTAGCAGTGTGGTCCACGAACACAATCTGACGTAA 432 0.3912 MDYVQENAIGLEDINLLEEDDDSGTILDEEGIDKEDNEQHPVDVISPCVGMYFDSVDNVKKFYKEYAIRSGFGTRIRTSRKDNDNQLCYFKLVCSREGKCVSSIPPEMKTLPTQRKQCPTRITVVRREDKWMISSVVHEHNLT 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01199 143 Coils Coil 142 143 - -
Viun10g01199 143 Pfam FAR1 DNA-binding domain 61 141 IPR004330 -
Viun10g01199 143 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 15 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01199 Viun-Chr10 21972978 21973409 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Viun10g01199 FAR1 3.8e-13 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01199 - - vun:114165405 289.271