Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01180 ATGCTATGGATTTGGAAGACCATGGGTTTTCGCATTGAGCTTATTGGGGCTTACCCCACTTGCAGAAAGACTCAGTTTCTTGACAGAACAAATTGCTTGCTACACTGGTCCCACAGGTACGTTGGGAGTATCCATAATTTGGGAGGACTTATGAATGCAACATGTGGGAATAGTACAGAGCTCATTATAGCAATTTTTGCCCTTAGCCATAATAACATTGCTTTGGTCAAATATTCTCTTCTGGGTTCTGTAATTTCTAATCTTCTTCTGGTTCTTGGAACCTCTCTATTCTGTGGAGGCCTTGTAAACCTTAGACAGGAACAGAAATATGATAGAAGACAAGCAGATATGAACTTGCTTATGCTGTTTGTGGCATTGCATTGCCACTTGCTGCCAATGTTGTTCCATTATGCTGGTGCCTCAGAAGGTGTCACTGCAGAATCATCTCTGCAGTTGTCAAGAGCTGCTAGCATTATCATGGTGATAGCATATTTTGCCTACCTTGTGTTCCAGCTTTGGACTCACAGAACACTATTTGAAGACCACGATCAAAATGAAGAAGAGGGTGACACTGATTCAGATGAAGCAGTGATAGGATTCTGGAGTGGGTGTGTTTGGCTGGTGGGGATCACTGTGATTATTGCAGTGCTGTCTGAATATGTGGTGGAAACAATTCAGGATGCATCTAATTCATGGGGTATATCTGTTAGCTTCCTCAGCATAATCTTGCTTCCAATAGTTGGTAATGCAGCAGAACATGCTGGAGCAATCATATTTGCTTTCAAGAACAAACTGGACATTTCTTTGGGTGTTTGTCTGGGTTCTGCAACTCAAATTAGCATGTTTGTGGTTCCCCTTTGTGTGATTGTTGCTTGGATTCTGGGAATTCAAATGGACCTCACCTTCAACCTCTTAGAAACAGGTTCACTTGCTTTGGCAATAATAACCACAGCTTTCACATTACAGGATGGAACTTCTCATTACATGAAAGGCCTTGTGCTCTTCCTGTGCTACATTATTATTGGGGCATGCTTTTTCGTACAAAGAACATCCTCTGACCAAATTAATGCTTCTAGCATAATGCTCAAATCAGCAAGGGAAGAAGTTTTCAGAGCTTAA 1119 0.4164 MLWIWKTMGFRIELIGAYPTCRKTQFLDRTNCLLHWSHRYVGSIHNLGGLMNATCGNSTELIIAIFALSHNNIALVKYSLLGSVISNLLLVLGTSLFCGGLVNLRQEQKYDRRQADMNLLMLFVALHCHLLPMLFHYAGASEGVTAESSLQLSRAASIIMVIAYFAYLVFQLWTHRTLFEDHDQNEEEGDTDSDEAVIGFWSGCVWLVGITVIIAVLSEYVVETIQDASNSWGISVSFLSIILLPIVGNAAEHAGAIIFAFKNKLDISLGVCLGSATQISMFVVPLCVIVAWILGIQMDLTFNLLETGSLALAIITTAFTLQDGTSHYMKGLVLFLCYIIIGACFFVQRTSSDQINASSIMLKSAREEVFRA 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01180 372 NCBIfam calcium/proton exchanger 46 346 IPR004798 GO:0006816|GO:0015369
Viun10g01180 372 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 45 349 IPR004713 GO:0006812|GO:0008324|GO:0016020
Viun10g01180 372 FunFam Vacuolar cation/proton exchanger 191 347 - -
Viun10g01180 372 NCBIfam calcium/proton exchanger 46 346 - -
Viun10g01180 372 Gene3D - 45 188 IPR044880 -
Viun10g01180 372 Gene3D - 190 346 IPR044880 -
Viun10g01180 372 Pfam Sodium/calcium exchanger protein 205 341 IPR004837 GO:0016020|GO:0055085
Viun10g01180 372 Pfam Sodium/calcium exchanger protein 35 173 IPR004837 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01180 Viun-Chr10 21675136 21679938 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01180 10 355 Antiporters AT2G38170 61.429 1.57e-144 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01180 K07300 - gmx:100782052 524.242