Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01173 ATGGCAGGTCAAGAGTTTGCTACTGAGAACTTCAATCCAAATGATACCAAGGGAAAGACCATTACTTGCAGAGCTGCTGTGGCATATGGTCCTGGAGAACCCTTTGTGGTGGAACGTGTTCTTGTTCATCCTCCTCAGAAAATGGAGAATGAGGCTGCTCGTGTTTATCCTCGGATTTTCGGCCATGAAGCTTCTGGGATTGTGGAGAGTGTGGGAGAAGGTGTGAGTGAGATGAAAGAAGGGGATTTGGTGGTGCCAATTTTCAATGGGGAATGTGGGGATTGCAAATATTGCAAGAGTGAGAAGACGAACAAGTGTGAGAGATTTGGGGTGGATATTATGAAGAAGGTGATGGATTGTGATGGTGGAACAAGGTTTTCTACAATGGATAGAAAACCCATCTTCCATTTCTTGAACACTTCAACTTTCACAGAGTACACAGTGCTGGATTCAGCATGCGTCGTCAAGATTGACCATAATGGCCATGGAAACTTCAACCCCTTCATCAAAACACTCACCTTGCTTAGTTGTGGTGTGTCTACAGGTGTTGGAGCTGCTTGGAACACCGCGAATGTGCATTCTGGTTCAACTGTAGCTGTCTTTGGTTTAGGCGCTGTGGGTCTTGCTGTTGCAGAAGGTGCACGAGCCAGAGGTGCGTCCAAAATAATAGGAGTCGATATCAACTCTGACAAATTCATCAAAGGCCGTGCAATGGGCATCACTCACTTCATAAATCCAAGAGATGATGAGAAGCCAGTATATGAGAGGATTAGAGAGATGAGTGATGGGGGCGTGCACTATAGTTTTGAATGTGCTGGAAATTTGAACGTTCTAAGGGATGCCTTCTTGTCAGCTCATGAGGGTTGGGGATTGACTGTGGTATTAGGGGTTCATACATCACCGAAACTGCTTCCAATCCACCCAATGGATTTGCTCGAGGGTCGTAGAATTGTAGGATCGGTTTTTGGAGGCTTCAAAGGGAAGACTCAATTACCACATTTTGCCAAAGAATGCATGGATGGAGTGGTGAAGTTAGATGGTTTTATCACTCATGAGCTTCCACTGGAGGAGATAAACCAGGCCTTTGATCTTTTGATTGCTGGAAAGTCTCTAAGATGTCTTCTACGCTTCTAA 1134 0.4515 MAGQEFATENFNPNDTKGKTITCRAAVAYGPGEPFVVERVLVHPPQKMENEAARVYPRIFGHEASGIVESVGEGVSEMKEGDLVVPIFNGECGDCKYCKSEKTNKCERFGVDIMKKVMDCDGGTRFSTMDRKPIFHFLNTSTFTEYTVLDSACVVKIDHNGHGNFNPFIKTLTLLSCGVSTGVGAAWNTANVHSGSTVAVFGLGAVGLAVAEGARARGASKIIGVDINSDKFIKGRAMGITHFINPRDDEKPVYERIREMSDGGVHYSFECAGNLNVLRDAFLSAHEGWGLTVVLGVHTSPKLLPIHPMDLLEGRRIVGSVFGGFKGKTQLPHFAKECMDGVVKLDGFITHELPLEEINQAFDLLIAGKSLRCLLRF 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01173 377 FunFam S-(hydroxymethyl)glutathione dehydrogenase 182 320 - -
Viun10g01173 377 Gene3D - 53 372 - -
Viun10g01173 377 Gene3D - 182 320 - -
Viun10g01173 377 Pfam Zinc-binding dehydrogenase 205 325 IPR013149 -
Viun10g01173 377 SUPERFAMILY GroES-like 327 377 IPR011032 -
Viun10g01173 377 SUPERFAMILY GroES-like 16 160 IPR011032 -
Viun10g01173 377 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 173 341 IPR036291 -
Viun10g01173 377 Pfam Alcohol dehydrogenase GroES-like domain 51 124 IPR013154 -
Viun10g01173 377 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 61 75 IPR002328 GO:0008270|GO:0016491
Viun10g01173 377 PANTHER ALCOHOL DEHYDROGENASE 18 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01173 Viun-Chr10 21516954 21532704 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01173 56 366 Monolignol Biosynthesis Gene Families AT2G21890 25.223 8.85e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01173 K00001 - gmx:100787307 630.557