Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01172 ATGGCAGGTCAAGAGTTTGCTACTGAGAACTTCAATCCAAATGATACCAAGGGAAAGACCATTACTTGCAGAGCTGCTGTGGCATATGGTCCTGGAGAACCCTTTGTGGTGGAACGTGTTCTTGTTCATCCTCCTCAGAAAATGGAGGTTCGAATCAAGATCCTCTTCACTTCAATCTGTCATACTGATCTCAGTGCTTGGCAAGGCGAGAATGAGGCTGCTCGTGTTTATCCTCGGATTTTCGGCCATGAAGCTTCTGGGATTGTGGAGAGTGTGGGAGAAGGTGTGAGTGAGATGAAAGAAGGGGATTTGGTGGTGCCAATTTTCAATGGGGAATGTGGGGATTGCAAATATTGCAAGAGTGAGAAGACGAACAAGTGTGAGAGATTTGGGGTGGATATTATGAAGAAGGTGATGGATTGTGATGGTGGAACAAGGTTTTCTACAATGGATAGAAAACCCATCTTCCATTTCTTGAACACTTCAACTTTCACAGAGTACACAGTGCTGGATTCAGCATGCGTCGTCAAGATTGACCATAATGGCCATGGAAACTTCAACCCCTTCATCAAAACACTCACCTTGCTTAGTTGTGGTGTGTCTACAGGTGTTGGAGCTGCTTGGAACACCGCGAATGTGCATTCTGGTTCAACTGTAGCTGTCTTTGGTTTAGGCGCTGTGGGTCTTGCTGTTGCAGAAGGTGCACGAGCCAGAGGTGCGTCCAAAATAATAGGAGTCGATATCAACTCTGACAAATTCATCAAAGGCCGTGCAATGGGCATCACTCACTTCATAAATCCAAGAGATGATGAGAAGCCAGTATATGAGAGGATTAGAGAGATGAGTGATGGGGGCGTGCACTATAGTTTTGAATGTGCTGGAAATTTGAACGTTCTAAGGGATGCCTTCTTGTCAGCTCATGAGGGTTGGGGATTGACTGTGGTATTAGGGGTTCATACATCACCGAAACTGCTTCCAATCCACCCAATGGATTTGCTCGAGGGTCGTAGAATTGTAGGATCGGTTTTTGGAGGCTTCAAAGGGAAGACTCAATTACCACATTTTGCCAAAGAATGCATGGATGGAGTGGTGAAGTTAGATGGTTTTATCACTCATGAGCTTCCACTGGAGGAGATAAACCAGGCCTTTGATCTTTTGATTGCTGGAAAGTCTCTAAGATGTCTTCTACGCTTCTAA 1197 0.452 MAGQEFATENFNPNDTKGKTITCRAAVAYGPGEPFVVERVLVHPPQKMEVRIKILFTSICHTDLSAWQGENEAARVYPRIFGHEASGIVESVGEGVSEMKEGDLVVPIFNGECGDCKYCKSEKTNKCERFGVDIMKKVMDCDGGTRFSTMDRKPIFHFLNTSTFTEYTVLDSACVVKIDHNGHGNFNPFIKTLTLLSCGVSTGVGAAWNTANVHSGSTVAVFGLGAVGLAVAEGARARGASKIIGVDINSDKFIKGRAMGITHFINPRDDEKPVYERIREMSDGGVHYSFECAGNLNVLRDAFLSAHEGWGLTVVLGVHTSPKLLPIHPMDLLEGRRIVGSVFGGFKGKTQLPHFAKECMDGVVKLDGFITHELPLEEINQAFDLLIAGKSLRCLLRF 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01172 398 Pfam Zinc-binding dehydrogenase 226 346 IPR013149 -
Viun10g01172 398 Pfam Alcohol dehydrogenase GroES-like domain 49 145 IPR013154 -
Viun10g01172 398 FunFam Alcohol dehydrogenase 6 26 215 - -
Viun10g01172 398 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 82 96 IPR002328 GO:0008270|GO:0016491
Viun10g01172 398 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 194 362 IPR036291 -
Viun10g01172 398 PANTHER ALCOHOL DEHYDROGENASE 18 395 - -
Viun10g01172 398 SUPERFAMILY GroES-like 16 181 IPR011032 -
Viun10g01172 398 Gene3D - 26 393 - -
Viun10g01172 398 Gene3D - 203 341 - -
Viun10g01172 398 FunFam S-(hydroxymethyl)glutathione dehydrogenase 203 341 - -
Viun10g01172 398 SUPERFAMILY GroES-like 348 398 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01172 Viun-Chr10 21516954 21532704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01172 49 387 Monolignol Biosynthesis Gene Families AT2G21890 26.027 6.96e-13 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01172 K00001 - gmx:100787307 686.026