Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01170 ATGAGATTGTCTTATAGTCCAGCTGCTCAATTCTTTCTTTTTCTGGTTCAGTGGACTGACTGTCATCTTGCTGGAGCCTTGGGATTGCTTAGAGTTCTCATATACAAGGTATATGAGGATGGGAAGACAACCATGTCCATTTATGAGAGAAAAACCAGTCTGAAGGATTTCTATGGTGTGATCTTTCCCTCTTTACTTCAACTCCACAGAGGAATCACTGATGTAGAAGAAAGAAAACAAAAAGATTTATTTGCTAAAAAGTACATGAACAAAGATATAGTAAGAAAAGGAAAACTATCTGAAATTGATATTGAGAGAGAAGAAGAATGCGGTATTTGCATGGAGATGAACAACAAGGTTGTCTTGCCCAATTGCAACCACACTTTGTGTATGAAATGCTACAGGAACTGGCATTCAAGATCTCAATCTTGCCCTTTCTGTCGGGATAGTCTTCAAAGAGTAAATTCTGGTGACCTTTGGATCTACTTGAACAACAATGAGATAAAAGACTTGGCTTCAATAAACAAGGAGAACCTAAAAAGACTATTTACGTATGTTGACAAGTTGCCTCTGATTGTGTCAGATCCTTCGCTTATGTCTTATCCTCAGCGCTAA 615 0.3805 MRLSYSPAAQFFLFLVQWTDCHLAGALGLLRVLIYKVYEDGKTTMSIYERKTSLKDFYGVIFPSLLQLHRGITDVEERKQKDLFAKKYMNKDIVRKGKLSEIDIEREEECGICMEMNNKVVLPNCNHTLCMKCYRNWHSRSQSCPFCRDSLQRVNSGDLWIYLNNNEIKDLASINKENLKRLFTYVDKLPLIVSDPSLMSYPQR 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01170 204 SMART ring_2 110 147 IPR001841 -
Viun10g01170 204 ProSitePatterns Zinc finger RING-type signature. 125 134 IPR017907 -
Viun10g01170 204 PANTHER RING FINGER PROTEIN 41, 151 1 200 - -
Viun10g01170 204 ProSiteProfiles Zinc finger RING-type profile. 110 148 IPR001841 -
Viun10g01170 204 FunFam RING/U-box superfamily protein 91 157 - -
Viun10g01170 204 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 183 IPR013083 -
Viun10g01170 204 Pfam Zinc finger, C3HC4 type (RING finger) 107 154 - -
Viun10g01170 204 SUPERFAMILY RING/U-box 98 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01170 Viun-Chr10 21420781 21422827 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01170 58 148 C3H Transcription Factor Family AT5G01960 31.250 1.45e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01170 K25840 - gmx:100819267 379.407