Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01169 ATGCGAAAGTCCTTCAAGGATTCCCTCAAAGCTCTTGAAGCCGACATTCTCTTTGCGAATACTCTTGCTTCTGATTATCCAAGAGAAAGTGATGGAGCCTGCTTACAGATGAGATTGTCTTATAGTCCAGCTGCTCAATTCTTTCTTTTTCTGGTTCAGTGGACTGACTGTCATCTTGCTGGAGCCTTGGGATTGCTTAGAGTTCTCATATACAAGGTATATGAGGATGGGAAGACAACCATGTCCATTTATGAGAGAAAAACCAGTCTGAAGGATTTCTATGGTGTGATCTTTCCCTCTTTACTTCAACTCCACAGAGGAATCACTGATGTAGAAGAAAGAAAACAAAAAGATTTATTTGCTAAAAAGTACATGAACAAAGATATAGTAAGAAAAGGAAAACTATCTGAAATTGATATTGAGAGAGAAGAAGAATGCGGTATTTGCATGGAGATGAACAACAAGGTTGTCTTGCCCAATTGCAACCACACTTTGTGTATGAAATGCTACAGGAACTGGCATTCAAGATCTCAATCTTGCCCTTTCTGTCGGGATAGTCTTCAAAGAGTAAATTCTGGTGACCTTTGGATCTACTTGAACAACAATGAGATAAAAGACTTGGCTTCAATAAACAAGGAGAACCTAAAAAGACTATTTACGTATGTTGACAAGTTGCCTCTGATTGTGTCAGATCCTTCGCTTATGTCTTATCCTCAGCGCTAA 723 0.39 MRKSFKDSLKALEADILFANTLASDYPRESDGACLQMRLSYSPAAQFFLFLVQWTDCHLAGALGLLRVLIYKVYEDGKTTMSIYERKTSLKDFYGVIFPSLLQLHRGITDVEERKQKDLFAKKYMNKDIVRKGKLSEIDIEREEECGICMEMNNKVVLPNCNHTLCMKCYRNWHSRSQSCPFCRDSLQRVNSGDLWIYLNNNEIKDLASINKENLKRLFTYVDKLPLIVSDPSLMSYPQR 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01169 240 SMART ring_2 146 183 IPR001841 -
Viun10g01169 240 Pfam Zinc finger, C3HC4 type (RING finger) 143 190 - -
Viun10g01169 240 ProSitePatterns Zinc finger RING-type signature. 161 170 IPR017907 -
Viun10g01169 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 124 219 IPR013083 -
Viun10g01169 240 ProSiteProfiles Zinc finger RING-type profile. 146 184 IPR001841 -
Viun10g01169 240 PANTHER RING FINGER PROTEIN 41, 151 3 236 - -
Viun10g01169 240 FunFam RING/U-box superfamily protein 127 193 - -
Viun10g01169 240 SUPERFAMILY RING/U-box 134 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01169 Viun-Chr10 21420768 21424614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01169 94 184 C3H Transcription Factor Family AT5G01960 31.250 2.32e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01169 K25840 - pop:7466068 405.986