Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01162 ATGGCCACCGCAACGGCTACAGCAGCGGCAACGTCCTCCTTCATGGGGACGCGCCTCCTGGACGCGCATTCTGGGTCGGGGCGGATCCAGGCGCGATTCGGGTTCGGGTCAAAGAAGAAGGCCGCGCCCAAGAAGGTGTCGAAGGGCCCGGGCACGGACAGGCCGTTGTGGTACCCCGGCGCGAAGGCACCGGAGTGGCTGGACGGAAGCCTTGTCGGTGACTACGGGTTCGACCCGTTCGGGCTCGGGAAGCCCGCGGAGTATTTGCAGTTTGAGCTGGACTCGCTGGACCAGAACCTGGCGAAGAACGAGGCCGGGATCATCATCGGAACCAGGACCGAGGCTGCGGACGTGAAGTCCACGCCGTTCCAGCCCTACAGCGAGGTCTTCGGCCTCCAGAGGTTCCGTGAGTGCGAGCTCATCCACGGACGCTGGGCCATGCTCGCCACGCTCGGAGCCCTCTCCGTCGAGTGGCTCACCGGTGTCACATGGCAGGACGCCGGCAAGGTGGAGCTAGTAGAAGGATCATCATACCTTGGGCAACCACTTCCATTCTCAATCACGACATTGATTTGGATCGAGGTTCTGGTAATTGGGTACATAGAGTTTCAGAGGAATGCAGAGCTTGACCCAGAAAAGAGACTGTACCCAGGTGGCAGCTACTTCGACCCTCTTGGTTTGGCCTCAGACCCAGAGAAGAAAGCCACTCTTCAATTGGCAGAGATCAAGCACGCACGTCTTGCAATGGTGGGCTTCTTGGGCTTTGCAGTCCAAGCTGCTGCCACTGGCAAGGGCCCACTCAACAACTGGGCCACTCACTTGAGTGACCCACTTCACACAACCATCATTGACACCTTCTCGTCATCTTAA 870 0.5943 MATATATAAATSSFMGTRLLDAHSGSGRIQARFGFGSKKKAAPKKVSKGPGTDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNEAGIIIGTRTEAADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGSYFDPLGLASDPEKKATLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01162 289 SUPERFAMILY Chlorophyll a-b binding protein 51 287 - -
Viun10g01162 289 Gene3D Chlorophyll a/b binding protein domain 57 289 - -
Viun10g01162 289 FunFam Chlorophyll a-b binding protein, chloroplastic 111 288 - -
Viun10g01162 289 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 3 285 IPR001344 GO:0009765|GO:0016020
Viun10g01162 289 Pfam Chlorophyll A-B binding protein 63 259 IPR022796 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01162 Viun-Chr10 21366669 21368691 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01162 15 289 Chloroplast and Mitochondria Gene Families AT3G08940 86.594 5.53e-175 483
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01162 K08915 - gmx:100785180 542.347