Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01140 ATGATGAATGACGTAGGTAGAAAGGTGGGTTTGGCATGTTGTATTGTTTTGCTTGTTGTGTATGAAGATTTCGGTGAATTGGAGGTTGGAGATGATGGTTCTATCAATGGGGATCAGAGACTATGGCTGCTAAACAGAAGGAGAAGGAGTAAGAATGGTGCTGATGACATCGCAGAGACTATTCACCGGATGGTGGATGCGATGCAGCCACCTATAGCAGCGCAGCATAGAATGGCGATTGCACCAGAAGCTATGAAACAGCAACACCACCAACAAAAACAAGAGCACAAGTTTCGCGGCGTGCGGCAGCGGCCATGGGGACGGTGGGCCGCCGAGATAAAAGACCCTATACGGCGGAAACGAGTGTGGCTTGGAACCTTCGACACGGCAGAAGAAGCAGCTGTGGTTTACGACAGAGCAGCTATAAACCTCAGAGGTGCCGATGCTGTCACTAATTTCATCAAACCGCCGTTGAAAGAGTGTGAAAGTGGGCCTTGGATGGAACCTTTGTCTTTGGAAGAAACATTCAAAGAAGAAGTGTTTGATGGGTTAAACGATGAAGTTGATAGTTTCTTGTTTTCTGATCATGTTCTTTATGAGCAACCTCTTCCTACTGTGTTTTCTAACATTGATGTTTCGTTGGATGAGGATCTTGAATCATGTAAATGGGATGTAGATAGCTTTTTCACTGATGATACTTTTCAATAA 708 0.4506 MMNDVGRKVGLACCIVLLVVYEDFGELEVGDDGSINGDQRLWLLNRRRRSKNGADDIAETIHRMVDAMQPPIAAQHRMAIAPEAMKQQHHQQKQEHKFRGVRQRPWGRWAAEIKDPIRRKRVWLGTFDTAEEAAVVYDRAAINLRGADAVTNFIKPPLKECESGPWMEPLSLEETFKEEVFDGLNDEVDSFLFSDHVLYEQPLPTVFSNIDVSLDEDLESCKWDVDSFFTDDTFQ 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01140 235 ProSiteProfiles AP2/ERF domain profile. 97 154 IPR001471 GO:0003700|GO:0006355
Viun10g01140 235 SMART rav1_2 97 160 IPR001471 GO:0003700|GO:0006355
Viun10g01140 235 SUPERFAMILY DNA-binding domain 97 153 IPR016177 GO:0003677
Viun10g01140 235 PRINTS Ethylene responsive element binding protein signature 120 136 IPR001471 GO:0003700|GO:0006355
Viun10g01140 235 PRINTS Ethylene responsive element binding protein signature 98 109 IPR001471 GO:0003700|GO:0006355
Viun10g01140 235 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 86 161 - -
Viun10g01140 235 Pfam AP2 domain 97 146 IPR001471 GO:0003700|GO:0006355
Viun10g01140 235 CDD AP2 98 153 IPR001471 GO:0003700|GO:0006355
Viun10g01140 235 FunFam Ethylene-responsive transcription factor 2 96 155 - -
Viun10g01140 235 Gene3D AP2/ERF domain 96 155 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01140 Viun-Chr10 20529721 20533374 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01140 66 165 AP2-EREBP Transcription Factor Family AT4G27950 52.885 3.57e-29 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun10g01140 AP2 5.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01140 - - vun:114165374 483.026