Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01116 ATGCCTTCCTCTTCCACCACCATAGTCTCTAGATGCTTAATCCATCCCGACCACAAATCCAGCATGAAACCACTCAAACTCTCTGTTTCTGACCTTCCAATGTTGTCGTGTCACTACATCCAAAAGGGCGTCTTGCTCACTGCCCCAACCTCTTCCTTCGAAGACCTCATTCTCTCTCTCAAACACTCTCTCTCCGCCGCACTCTCCCACTTCCCTGCCCTCGCCGGTCGTCTCTCTACTGACTGCCAGGGTTACGTTCACATCGTCTGCAACGACGCTGGCGTCGACTTCATCCATGCCAAGGCCAAGCACTTAACTCTAAACGCCGTCGTTTCGCCCACGCTCGTTGATGTTCACCCTTGCTTTAAGGAGTTCTTCGCCTATGACATGATGATCTCCTACGCCGGCCACCACAATCCCCTCGCTGCCATCCAGGTCACCGAGCTCGCCGACGCCGTCTTCGTCGGCTGCACCATCAACCACGCTGTCACCGATGGCACCTCCTTCTGGCATTTTTTCAACACCTTCGCCGCCATCACCAAAGGCGGCGCAGCCAAGAAAGTACTCCGCGCGCCGGACTTCACGCGCGAAACTGTAATCAACTCCGACGCTGTCCTCTTCGTCCCCGCCGGCGGCCCAGCCCTCACCTTTGACGCCAAGGCACCCATCCGGGAACGAATCTTCCATTTCTCAAGCGAATCCATTCAGAAACTCAAACTTAGAGCCAACGCCAAATCCAACGAACTAACGGAGGTAATGGAAAAACCAGTGAATGACGGTTGGAAAATCGTTAACGGTAAGGTTATCGGAAAGGATAGCGGTAACGGAAGAAACGAGATCTCGTCATTTCAGTCGTTATCTGCTCAGCTCTGGCGTGCGGTGACACGTGCGAGGAAATTCAACGACCCTGCCAAAACGTCGACGTTTCGGATGGCCGTTAATTTCCGCCATCGTTTGGAGCCGAAGATGGACGCGTTTTACTTCGGTAATGCGATTCAGAGCATTCCAACAGTCGCAACCGTCAGGGATATCCTCTCACGCGATCTGCATTTCTGCGCGGAGTTGCTGCACCAAAACGTGATCGCCCACGATGACGCAACGGTGCGACGCGGCATAGAGGATTGGGAAAACGCGCCGAGGCTGTTTCCTCTCGGGAACTTCGACGGCGCGATGATCACCATGGGAAGCTCTCCGCGTTTTCCCATGTACGACAACGACTTCGGCTGGGGAAGGCCTATCGCGATTCGGAGTGGCAAAGCGAACAAATTCGACGGCAAAATCTCTGCGTTTCCAGGGAGAGAAGGGAACGGCAGTGTGGATCTGGAAGTCGTTTTGGCTCCGGAGACCATGGCGGGGCTAGAAAACGACATGGAGTTTATGCAATACGTAACGCAGGTGGTGTGA 1404 0.5434 MPSSSTTIVSRCLIHPDHKSSMKPLKLSVSDLPMLSCHYIQKGVLLTAPTSSFEDLILSLKHSLSAALSHFPALAGRLSTDCQGYVHIVCNDAGVDFIHAKAKHLTLNAVVSPTLVDVHPCFKEFFAYDMMISYAGHHNPLAAIQVTELADAVFVGCTINHAVTDGTSFWHFFNTFAAITKGGAAKKVLRAPDFTRETVINSDAVLFVPAGGPALTFDAKAPIRERIFHFSSESIQKLKLRANAKSNELTEVMEKPVNDGWKIVNGKVIGKDSGNGRNEISSFQSLSAQLWRAVTRARKFNDPAKTSTFRMAVNFRHRLEPKMDAFYFGNAIQSIPTVATVRDILSRDLHFCAELLHQNVIAHDDATVRRGIEDWENAPRLFPLGNFDGAMITMGSSPRFPMYDNDFGWGRPIAIRSGKANKFDGKISAFPGREGNGSVDLEVVLAPETMAGLENDMEFMQYVTQVV 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01116 467 Gene3D - 222 460 IPR023213 -
Viun10g01116 467 SUPERFAMILY CoA-dependent acyltransferases 60 183 - -
Viun10g01116 467 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 8 461 - -
Viun10g01116 467 Pfam Transferase family 7 460 - -
Viun10g01116 467 Coils Coil 235 255 - -
Viun10g01116 467 Gene3D - 6 206 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01116 Viun-Chr10 19626549 19628570 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01116 60 455 Monolignol Biosynthesis Gene Families AT5G48930 28.010 5.49e-33 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01116 - - var:108346317 876.315