Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01093 ATGGAGTTGGATCCATGGTTTGAAGGGCCACAGTACCTTTGGAGTATTTGTCCGAAAATCCCCTACTTGAATCCACACACTGAAAACATGTTTCCATCCCAAAGCTCCATTTTGATTCCACCATCTGAACCCATGACGTTTAACCCTAACCATGCTTTCCAGCATTTTGAAGAACAAATCGTGAACCCTCCGTTTGTGATGGACGATTCCAACCCCATCGTAACCCCCATGTATGGGAACGGGATACCAACCCCTTCTGTGGGTGATGGGTCTTTTGTTAGCATTAACAGTCACCAGCCTGTGATGTTAGCACCAAAGAACAACAACAAAATTGAAACTTTGTATGATCACCATAAAGGCAAAGTCATATGGGACTTTTCTCAGAAAACCACGGTTCATCCTTTTGAACCCTCTTCTCCCAAGTCACCATCTCCTTTCTGTCTCTCTAATCACTATGGATTTGGTATGAGTGAATTTCACAGGGACACTGATATAAGGATGGTAGAGGTGGAAAAGAATACCAACAATGCTACTCATAATATAATCAAAGGGCAGTGGACTCCCGAAGAAGACAGTGCTCTTGTGGAGTTGGTGAATCGATTTGGACCCAAGAAATGGTCAGAAATTGCAAAGTTGATGTGCGGCAGAGTTGGAAAGCAATGTCGAGAAAGATGGCACAATCATCTCCGCCCAAACATTAGGAAGGAGTCGTGGAGCCTGGAGGAAGACATGATTCTGATCAAAGCCCACCAGGAATTTGGAAATAGGTGGTCAGAGATTGCTAAGAGGCTACCTGGAAGGACTGAAAATACTATTAAGAATCATTGGAATGGAACCAAGAGACGCCAGAGTTGCAAGACCTACAACGGGAATAAGAAAAACCCTTACCAAGGATCAATGCTCCGTGCTTACGTTAAAAGGGTCACTGCTACGGAAGAATCTACAAAAGTCTTCAAGAAACCCTCAAGCAAAAAGAACAAGAATGTGCCACCACCTTTGTTGAGCTTTGATCAATGTACAAACCAAATGTTTATTGGAAGTAGCAGCAACTACGCGCCATTGCAAGGGGTTTCCTATGCTGCAATTGGAAAGAATGCAATGAACAGGGGAATCAATCCGATAACTACAAAATACTGA 1137 0.4336 MELDPWFEGPQYLWSICPKIPYLNPHTENMFPSQSSILIPPSEPMTFNPNHAFQHFEEQIVNPPFVMDDSNPIVTPMYGNGIPTPSVGDGSFVSINSHQPVMLAPKNNNKIETLYDHHKGKVIWDFSQKTTVHPFEPSSPKSPSPFCLSNHYGFGMSEFHRDTDIRMVEVEKNTNNATHNIIKGQWTPEEDSALVELVNRFGPKKWSEIAKLMCGRVGKQCRERWHNHLRPNIRKESWSLEEDMILIKAHQEFGNRWSEIAKRLPGRTENTIKNHWNGTKRRQSCKTYNGNKKNPYQGSMLRAYVKRVTATEESTKVFKKPSSKKNKNVPPPLLSFDQCTNQMFIGSSSNYAPLQGVSYAAIGKNAMNRGINPITTKY 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01093 378 Pfam Myb-like DNA-binding domain 186 243 - -
Viun10g01093 378 CDD SANT 186 229 IPR001005 -
Viun10g01093 378 CDD SANT 237 277 IPR001005 -
Viun10g01093 378 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 234 284 IPR017930 -
Viun10g01093 378 ProSiteProfiles Myb-like domain profile. 230 280 IPR001005 -
Viun10g01093 378 ProSiteProfiles Myb-like domain profile. 178 229 IPR001005 -
Viun10g01093 378 FunFam Transcriptional activator Myb isoform A 182 235 - -
Viun10g01093 378 Gene3D - 237 279 - -
Viun10g01093 378 SMART sant 234 282 IPR001005 -
Viun10g01093 378 SMART sant 182 231 IPR001005 -
Viun10g01093 378 SUPERFAMILY Homeodomain-like 180 276 IPR009057 -
Viun10g01093 378 Gene3D - 182 234 - -
Viun10g01093 378 PANTHER MYB PROTEIN-RELATED 156 318 - -
Viun10g01093 378 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 178 233 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01093 Viun-Chr10 18281706 18284501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01093 172 308 MYB Transcription Factor Family AT4G18770 59.124 1.21e-50 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun10g01093 Myb_DNA-bind_6 2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01093 - K09422 vra:106773360 554.288