Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01085 ATGGGGGCTCGTTGCTCTAAATTCTCTTTCTGCTGGTTCCACTCCCACCTCAAGCCTTCTGTCCTTGAGTCCTCTGACCAAGAAAATGGTGAGAAGAATGAGAGAAAATTGTGGCCCAGTTTTGGTGAGTTCAGTTTGGAGCAACTGAAGACTGCCACAAATGGGTTTTCTTCAGAAAACATAGTGTCTGAACATGGTGAAAAAGCTCCCAATGTTGTATACAAAGCAAAGCTTGATAATGGACAGTGGATCGCCATCAAACGTTTCAACAAGTTTGCTTGGCCTGATTCTCGCCAATTCCTAGAGGAAGCCAAACAAGTGGGGAGCCTTAGAAGCGAACGCCTAGCAAATTTGATTGGTTATTGCTATGAAGGGGAAGAGAGGCTTCTAGTAGCAGAGTTTATGCCACATGAAACTCTGGCCAAGCATCTTTTTCATTGGGAAGCACAGCCAATGAAGTGGGTCATGAGGTTGAGGGTCGCTTTCTACTTGGCTCAAGCTCTAGAATATTGCACTAGTAAAGGAAGGGGCTTGTATCATGATCTCAATGCCTATAGGATCTTGTTTGATCAAGATGGTAATCCCAGGTTGTCCTGCTTTGGACTCATGAAGAACAGCAGAGATGGCAAGAGTTACAGTACAAACTTGGCTTTCACCCCTCCTGAGTACCTACGGACTGGTAGAGTGACCCCAGAGAGCGTGGTTTACAGTTTTGGAACTCTGCTGCTAGATCTCCTGAGTGGTAAACATATTCCGCCAAGCCACGCACTTGATCTTATTCGTGGCAAAAACTTTCTGATGTTGATGGACTCTGCCTTAGAGGGTCACTTTTCAAAAGATGATGGAACTGAGTTGGTTCGTTTGGCCTCTCGTTGTTTGCAATACGAAGCTCGTGAAAGGCCAAATGTGAAGTCTCTTGTTACGTCTCTTATGTCACTTCAGAAAGAAATAGAGGTCCCCTCGTATGTTTTGATGGGTCTACGGCAAGAAACTGCATCCTCAACGAAGCAATTGTCGTTAACACCTTTTGGTGAAGCTTGTTTGAGACGTGATCTTACTGCAATCCATGAAATATTGGAGAAGACTGGTTACAAGGACGATGAAGGAATTGCGAATGAGCTTTCCTTTCAATTGTGGACAAGCCAAATGCAGGAAACCTTGAATTTGAAGAAGCATGGCGATACTGCTTTTCGAGCTAAAGACTTTGTCACTGCCATTGACTGCTACACTCAATTCATAGAGGGAGGGACCATGGTGTCACCCACGGTGTATGCAAGGAGATGCTTATCTTATTTAATGAATGAGATGGCACAAGAAGCTCTTGGGGATGCCATGCAAGCCCAAGTTGTATCTCCTGAATGGCATACTGCTTTGTATCTTCAAGCAGCTTGTCTTTTTAGCCTTGGAATGGAGAATGATGCTCAAGAGACTCTCAGAGATGGTACTAACATGGAAGCCAGAAAAAACAAAAACTTCAAAATTGTATAG 1488 0.4415 MGARCSKFSFCWFHSHLKPSVLESSDQENGEKNERKLWPSFGEFSLEQLKTATNGFSSENIVSEHGEKAPNVVYKAKLDNGQWIAIKRFNKFAWPDSRQFLEEAKQVGSLRSERLANLIGYCYEGEERLLVAEFMPHETLAKHLFHWEAQPMKWVMRLRVAFYLAQALEYCTSKGRGLYHDLNAYRILFDQDGNPRLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVVYSFGTLLLDLLSGKHIPPSHALDLIRGKNFLMLMDSALEGHFSKDDGTELVRLASRCLQYEARERPNVKSLVTSLMSLQKEIEVPSYVLMGLRQETASSTKQLSLTPFGEACLRRDLTAIHEILEKTGYKDDEGIANELSFQLWTSQMQETLNLKKHGDTAFRAKDFVTAIDCYTQFIEGGTMVSPTVYARRCLSYLMNEMAQEALGDAMQAQVVSPEWHTALYLQAACLFSLGMENDAQETLRDGTNMEARKNKNFKIV 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01085 495 Gene3D Tetratricopeptide repeat domain 383 494 IPR011990 GO:0005515
Viun10g01085 495 SUPERFAMILY TPR-like 387 480 IPR011990 GO:0005515
Viun10g01085 495 FunFam probable serine/threonine-protein kinase At5g41260 136 327 - -
Viun10g01085 495 Gene3D Transferase(Phosphotransferase) domain 1 136 327 - -
Viun10g01085 495 ProSiteProfiles Protein kinase domain profile. 59 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g01085 495 Gene3D Phosphorylase Kinase; domain 1 30 134 - -
Viun10g01085 495 Pfam Protein tyrosine and serine/threonine kinase 73 310 IPR001245 GO:0004672|GO:0006468
Viun10g01085 495 FunFam probable serine/threonine-protein kinase At4g35230 384 493 - -
Viun10g01085 495 FunFam probable serine/threonine-protein kinase At4g35230 31 134 - -
Viun10g01085 495 SUPERFAMILY Protein kinase-like (PK-like) 36 320 IPR011009 -
Viun10g01085 495 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 20 490 IPR045845 GO:0004672|GO:0009742
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01085 Viun-Chr10 18099957 18103579 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01085 19 322 Glycoside Hydrolase AT3G07070 33.333 3.85e-43 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Viun10g01085 PK_Tyr_Ser-Thr 2.1e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01085 - - gmx:100814477 966.837