Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01075 ATGGAACCAGAAGAAACCGCCGTTACCGCTGTCGACGGAAGTGGTGATGAGGGACTGCTGTTGTTAGACGGCAGTGATGTCGGCGGTGGCAAGGACAGAGTGAAGGGTCCTTGGTCCCCGGAAGAGGACGCCATTCTGAGTCGTCTCGTTAGCAAGTTCGGCGCCAGAAACTGGAGTCTCATCGCACGGGGGATCAGTGGAAGATCCGGCAAGTCTTGCCGTCTCCGGTGGTGCAACCAGCTCGACCCCTCCGTTAAGCGCAAGCCCTTTACAGATGAGGAGGACAGAATCATAGTTGCTGCTCATGCAATTCATGGCAACAAATGGGCAGCCATTGCCAGGCTTCTACCCGGAAGAACGGATAATGCCATTAAGAACCACTGGAATTCCACTCTGAGGCGTCGGGGAGTTGAACTTGATAAGATTAAATTAGAATCTGGTAACTTCATGGAAGATGCCAGCTTAGAGAAGGCAAAAGGATCCTCGGAAGACACTCTATCATGTGGGGACGTTTCTTTGAAATCCTCGGAAGGGAGAGATGTCAGTTCTGTAGACGTCATGGATGATAAATCTGATGGTAAAGCTCAAGCTGAGGGCCAATTACACCACAAAGTCAAGGATCCACCTACCCTTTTTCGGCCAGTAGCTCGTGTAAGTGCTTTCAACGTTTATCAGTCGAATGATGTTACACAGCCTTCAACATCAATTCAAAGACCTGTCCCGAAGCAAGGTCCCATTTTACAATCGTCAAGACCAGATATGGAATTTTGTAGGATGGTTGAAGGAATTTGTGGTGACCAGGCAGTACCTCACCAGTGTGGCCATGGTTGCTGTGCTGCTCCAAATGGTAGAAAGTCTGAAAGCTCTTTGTTGGGACCGGAATTCATCGAATTTTCTGAACCCCCATCTTTCCCAAATTTTGAGTTGGCTGCAATCGCTGCAGACATCAGTAACCTTGCCTGGCTTAAAAGTGGATTGGAGAATAGTAGTGTGAAAATGATGGGAAACACGTCTGGCAGTGTAATATCAAATGGATCTCGAGTACATATTGGCCATTAG 1059 0.4835 MEPEETAVTAVDGSGDEGLLLLDGSDVGGGKDRVKGPWSPEEDAILSRLVSKFGARNWSLIARGISGRSGKSCRLRWCNQLDPSVKRKPFTDEEDRIIVAAHAIHGNKWAAIARLLPGRTDNAIKNHWNSTLRRRGVELDKIKLESGNFMEDASLEKAKGSSEDTLSCGDVSLKSSEGRDVSSVDVMDDKSDGKAQAEGQLHHKVKDPPTLFRPVARVSAFNVYQSNDVTQPSTSIQRPVPKQGPILQSSRPDMEFCRMVEGICGDQAVPHQCGHGCCAAPNGRKSESSLLGPEFIEFSEPPSFPNFELAAIAADISNLAWLKSGLENSSVKMMGNTSGSVISNGSRVHIGH 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01075 352 PANTHER MYB PROTEIN-RELATED 35 204 - -
Viun10g01075 352 MobiDBLite consensus disorder prediction 165 179 - -
Viun10g01075 352 FunFam MYB transcription factor 35 86 - -
Viun10g01075 352 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 136 IPR017930 -
Viun10g01075 352 SMART sant 34 83 IPR001005 -
Viun10g01075 352 SMART sant 86 134 IPR001005 -
Viun10g01075 352 MobiDBLite consensus disorder prediction 160 201 - -
Viun10g01075 352 CDD SANT 37 79 IPR001005 -
Viun10g01075 352 ProSiteProfiles Myb-like domain profile. 30 81 IPR001005 -
Viun10g01075 352 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 85 IPR017930 -
Viun10g01075 352 Gene3D - 34 86 - -
Viun10g01075 352 Pfam Myb-like DNA-binding domain 38 95 - -
Viun10g01075 352 ProSiteProfiles Myb-like domain profile. 82 132 IPR001005 -
Viun10g01075 352 MobiDBLite consensus disorder prediction 181 201 - -
Viun10g01075 352 SUPERFAMILY Homeodomain-like 32 128 IPR009057 -
Viun10g01075 352 CDD SANT 89 132 IPR001005 -
Viun10g01075 352 Gene3D - 89 135 - -
Viun10g01075 352 FunFam Transcription factor MYB44 89 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01075 Viun-Chr10 17742996 17752793 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01075 24 352 MYB Transcription Factor Family AT3G09230 50.000 2.89e-106 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun10g01075 Myb_DNA-bind_6 3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01075 K09422 - gmx:100813406 607.06