Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01064 ATGGAGTTTGCATCTTCTTCATCATCTTCATCCTTCTTAACATTAGAACCCCATTTCATATACGATGTGTTCATCAACTTTTGGGGAGAAGACATCGGTAGAAGGTTCATTTCTCATCTCCATTATGCCCTTTTACAAGCTCAAGTCAAAACTTTGATTAAAGAGGAGAATCTGCCGGAGGGACCGAAGCGGGAAGAGCACATGCGAGCAATAGGAGGCACTAAGGCTACAATAATTGTTTTCACCAAATCATACGCTGAATCTACCTGCTGTCTTCGTGAACTTGAAAAAATCATTGAATGCCACGAAACTTTTGGCCAAATACTTATGCCTGTGTTTTACGAGATTGACAAGTTGGATGTACGCCATCAGAAGTATGATTTTGGACAAGCGTTGGAAGAAGCTGCACACAAAAGCTATTCAGGAGAACAAGTGGAACATGCGTTGTCCAGGTGGAGTCGTGCACTCACCAAAGCTGCAAGTATCACTTGTTGGGATCTCAGAAATTTCAGGCATGATGCTGAACTTGTAGAGGGAATTGTTAGCCGCGTTAAGATGATACTGGACTATAAAGACTTGTTTATTACCCAATATCCTGTTGGATTAGAGTCACACGTGGAAAAGGTGATTGCATGTATTGAAAATCATTCCACCAAAGTGTGTATGATAGGGATATGGGGAATGGGAGGATCAGGTAAAACAACCATAGCCAAAGCCATCTACAATCGAATTTATCGTGAATTCATTGGAAAGAGTTTTATTGAGAATATTAGTGATGTTTGGGATCCAAAAAACGAAAGGTATGTTGATTTGCAAGAAAATCTTCTTTCTGATATCCTAAAATCTAAGTTGGAGGTGGAAAGCGTTGGGATGGGAAGAACTATGATCGAGAATGGACTTACTCGAAAAAAGTTATTCATTGTGCTTGATGATGTGAGTGAGTTTGGCCAGTTAGAAAACCTATGCGGGAATCGTGAATGGTTCGGTCAAGGAACTGTGATAATCATTACAACTAGAGATGTTAACTTGCTGAACCAAATAAAAGTTAATTATGTGTATAAAATGGATGTTATGAACGAAAATGATTCCCTTGAGCTTTTAAGTTGGCATGCCTTTAGAGAAGCAAAACCAAGAAAAGAATTGCATGAACATGGAAGAAACGTAACTCCTTATTGTGGAGGACTACCACTAGCTCTTGAGGTCCTTGGTTCCTTTTTATGTGAGAAGACAATGGAGGAGTGGGAAAGTGTATCGTCGAAATTAAAAATAATTCCCATTGATCAAATTGAAGAGAAATTAAAAATAAGTTTTGACGGTTTACATGATACGGAAAAAGATATATTTATTGATGTTTGTTGCTTTTTTATTGGTAAAGAAAGAGGCCATGTCACACGGATATTAAATGACTGTGGACTACATGGTGATATCGGAATAACAGTTCTCATAGAACGTGGCCTCATAAAAGTGGACAGACATAACAAACTTCAAGTGCATCCTTTGTTAAAACACATGGGAAGAGAAATTATTCGTCAAAGATGCCAAAAGGAACCGGATAAATGGAGTCGATTATGGTTTCAAGATGACGTAAAAGACGTACCGAAAGATAATACGGCGACGGAAGCTATCCAGGGATTGAACCGGAAAGTGTATTACTTGGAGCCTATGGTTTTAAGTAAAGGAGGTGATTAA 1689 0.3866 MEFASSSSSSSFLTLEPHFIYDVFINFWGEDIGRRFISHLHYALLQAQVKTLIKEENLPEGPKREEHMRAIGGTKATIIVFTKSYAESTCCLRELEKIIECHETFGQILMPVFYEIDKLDVRHQKYDFGQALEEAAHKSYSGEQVEHALSRWSRALTKAASITCWDLRNFRHDAELVEGIVSRVKMILDYKDLFITQYPVGLESHVEKVIACIENHSTKVCMIGIWGMGGSGKTTIAKAIYNRIYREFIGKSFIENISDVWDPKNERYVDLQENLLSDILKSKLEVESVGMGRTMIENGLTRKKLFIVLDDVSEFGQLENLCGNREWFGQGTVIIITTRDVNLLNQIKVNYVYKMDVMNENDSLELLSWHAFREAKPRKELHEHGRNVTPYCGGLPLALEVLGSFLCEKTMEEWESVSSKLKIIPIDQIEEKLKISFDGLHDTEKDIFIDVCCFFIGKERGHVTRILNDCGLHGDIGITVLIERGLIKVDRHNKLQVHPLLKHMGREIIRQRCQKEPDKWSRLWFQDDVKDVPKDNTATEAIQGLNRKVYYLEPMVLSKGGD 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01064 562 SUPERFAMILY "Winged helix" DNA-binding domain 428 531 IPR036390 -
Viun10g01064 562 SUPERFAMILY Toll/Interleukin receptor TIR domain 16 162 IPR035897 -
Viun10g01064 562 Gene3D - 193 353 IPR027417 -
Viun10g01064 562 Gene3D - 357 441 IPR042197 -
Viun10g01064 562 Pfam NB-ARC domain 203 427 IPR002182 GO:0043531
Viun10g01064 562 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 450 IPR027417 -
Viun10g01064 562 PRINTS Disease resistance protein signature 222 237 - -
Viun10g01064 562 PRINTS Disease resistance protein signature 299 313 - -
Viun10g01064 562 PRINTS Disease resistance protein signature 392 406 - -
Viun10g01064 562 ProSiteProfiles TIR domain profile. 19 188 IPR000157 GO:0007165
Viun10g01064 562 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 543 IPR044974 GO:0006952
Viun10g01064 562 SMART till_3 20 162 IPR000157 GO:0007165
Viun10g01064 562 Pfam TIR domain 21 184 IPR000157 GO:0007165
Viun10g01064 562 Gene3D - 20 192 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01064 Viun-Chr10 17144775 17149571 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01064 21 545 WRKY Transcription Factor Family AT4G12020 26.755 2.14e-50 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01064 - - vun:114165946 803.897