Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01039 ATGGAGTTTGCTTCTTCTTCTTCGTCGTCATCTTCATCCTTCTTAAAATCAGAACCCCAGTTCATATACGATGTGTTCATTAACTTTGGGGGAGAAGATATCTGTAGAAAGTTCGTTTCTCATCTCCATTCTGCCTTTTCACTTTCTCAAGTCAAAACTTTGATTAGCAAGGAGAATCCGCAAGAGGGAATGAAGCTGGAAGAACACATGCGAGCAATAGAAAGTTCTAAGATTACAATAATTGTTTTCTCGAAAACATACACTGAATCTAGCTGTTGGCGTCTTGAGCTTGAAAAAATCATTGAATGCCGCCAAACTTTTGGACAAATAGTTCTGCCAGTAATTTACGATATTGTCCGATTGCATGAAAGCCATCAGAAGGTTGTAAAGGTGTTGGAAAAAGCTACACCAGGAAGCTATTCAGGAGAACAACTGGAGCATGCAATGTCCAGGTGGAGCAGAGCACTAACCAAAGCTGCAGGTATCACTGGTTGGGATTTTAGAGATTTCAGGCACGATGCTGAATTAGTGGATGAAATTGTTAGACGCGTTCAGACATTGCTGGACTATACAGACTTGTCTATTACCCGATTTCCTGTCGGATTAGAGTCCCACGTGGAAAAGGTGATTGGAATTATTGAAGAACAATCCACTAAAGTCTGTATGATAGGGATATGGGGAATTGGAGGATCGGGTAAAACTACCATAGCCAAAGCAATCTATAATCGAATTTATCATCCATTCATCGGTAAGAGTTTTATTGAAAATATTGGACAATTTCAGAATAGAGTAAACAGAATGCATGTTCATTTGCAAGAAAATCTTCTATATGATGTCTTAAAATCCAAGTTTGAGGTGGAAAGCGATAGGGTGGGAAGAACTATGATCGAGACTAAACTTTCACGAAAAAAGTTGCTCATTGTGCTTGATGGTGTGAATGAGTTTGGCCAATTAGAAAACCTATGCGGGAATCGAGAATGGTTCGGTCAAGGAACTGTGATAATCATCACAACTAGAGATGTTACCGTGCTGAACCGACTAAAAGTTAATCACGTGTATAAAATGGATGTTATGAACGAAAATGATTCCCTTGAGCTTTTAAGTTGGCATGCCTTTGGAGAAGCAAAACCAAGAAAAGAATTGAATGAACTTGCAAGAAACATAGTTGCTTATTGTGCAGGACTACCCTTAGCTCTTCAGTTCCTTGGTTCCTACTTATGTGATAGGACAAAGGAAGAGTGGGAAAGTGTATCATCAAAACTAAATGTAAATCCCTTTAATCAAATTCAAGAGAAATTGGAAATAAGTTTTGATGGTTTAAATCACATGGAAAAGGATATATTTCTTGATATATGTTGTTTCTTTATTGGTAAAGATAGAGGCTATGTTACAGAAATACTAAATGGCTGTGGACTGTATGCTGATATGGGAATAACAGTTCTGATAGAACGTGGCCTCATAAAAGTTGAAAGAAACAACAAACTTGAAATGCATCCTTTGTTAAGAGACATGGGAAGAGAAATTATTCGTCAAAGATGCCCAAAGGAACCAGGGAAAAGGAGTCGACTATTGTTTGAAGATGATATAAAAGATGTACTGAAAAGGAATACTGGAACAAAAGCTACTCAGGGATTGTCCCTGAAACAGCATTCAACCAGCAAAGATTGCTTTGAAGCTCATGCTTTCAAGGAAATGAAGAGACTAAGACTTCTACAACTGGATCATGTACAACTTACTGGAGATTATGGGTACCTTTCTAAACAACTGAGATGGATTTGTTGGAAAGGGTTTCCTTCAAAATACATGCCAAACAACTTTCATATGGAAAATGTAATTGCAATTGATTTAAAACATAGTTACCTTCAACTCGTCTGGCAGCAACCCCAGGTTCTAGAGGGGTTAAAATTCCTTAATCTTAGTCACTCCAAGTACTTGAGAGAAACACCTGACTTTTCAGGACTACCAAATCTTGAACAGCTCATTCTAAAAGATTGCCCAAGTTTGTGCAAGGTACACCAATCCATCGGAGATCTCCGCAATCTACTACTGATAAATTTGAAGGATTGCACAAGTCTAAGCAGTCTCCCCAGAAAGGTATATAAGCTAAAATCTTTAAGAACTTTCATTCTCTCAGGTTGTTTCAAGATTGACATATTGGAAGAAGACATAGTGCGGATGGAATCCTTGATAGCTATAGTTTCTGAAAATACAGTTGTGAAACAAGTGCCCTGTTCAATTGTAAAAAGTATTGCATATATGTCCCTACGTGGATTTAAAGGATTGTTACGTAATACTTTTCCATCAATCATTCGATCTTGGATGTCACCAACAATGAATGACCAATATTTGAATACTCCGTTTTGCATGGATATGGAGAATAATGATTGGCGTGTCCTTGCGCTATTGCATAGGAGCCTTGCAAGTCTTCGAAGTATTTTGGTTCAATGTAAGACGGAGTTTCAACTATCTAAGAAAGTGAAAACAATTCTTGTCGAATACCCAGTAAACTTTACAGAATCAAGAATTTCGAATCATCACTTGAGGTTTTCGTTGATTGGAGTTGGAAGTTACATTAAATTCCTCAACACTCTCAATGATAGAATTTCTGAGGGATTGGCAAGCAGTGGGTCTTGTAAAGTTTCTCTTCCAAGTGACAACCATCCTTATTGGTTGGCCCGTATGGGTGAGGGGCATTCTGTTTCTTTCATTGTGCCTCAAGATTGTCACATGAAGGGAATTATTATGTGTGTTGTGTATTTATCAACCCATGGAATTGTGGCAACCGAATATCTTGCAAGTGTCTCAATTGTTAATTACACAAAGTGCACGTTGCATATACACAAGCATGGTACAGTAATCTCCTTTAATGATGAAGATTGGCATGGCATAATATCAAATTTAGAATCCGGAGATAAGGTGGAGATTTTTGTGACTTTTGATCACGGATTGGTGGTCAAGAACACAATTGTCTATTTGATATATGGTGACTCAAATGGCTTGGAAATGGGGCCTTGCCCGGAGCCAGAGGAAAATGGTCTGAATAAATTCATTAAGAAAATAGTAATGTGTGATTTCTGGTAA 3081 0.3794 MEFASSSSSSSSSFLKSEPQFIYDVFINFGGEDICRKFVSHLHSAFSLSQVKTLISKENPQEGMKLEEHMRAIESSKITIIVFSKTYTESSCWRLELEKIIECRQTFGQIVLPVIYDIVRLHESHQKVVKVLEKATPGSYSGEQLEHAMSRWSRALTKAAGITGWDFRDFRHDAELVDEIVRRVQTLLDYTDLSITRFPVGLESHVEKVIGIIEEQSTKVCMIGIWGIGGSGKTTIAKAIYNRIYHPFIGKSFIENIGQFQNRVNRMHVHLQENLLYDVLKSKFEVESDRVGRTMIETKLSRKKLLIVLDGVNEFGQLENLCGNREWFGQGTVIIITTRDVTVLNRLKVNHVYKMDVMNENDSLELLSWHAFGEAKPRKELNELARNIVAYCAGLPLALQFLGSYLCDRTKEEWESVSSKLNVNPFNQIQEKLEISFDGLNHMEKDIFLDICCFFIGKDRGYVTEILNGCGLYADMGITVLIERGLIKVERNNKLEMHPLLRDMGREIIRQRCPKEPGKRSRLLFEDDIKDVLKRNTGTKATQGLSLKQHSTSKDCFEAHAFKEMKRLRLLQLDHVQLTGDYGYLSKQLRWICWKGFPSKYMPNNFHMENVIAIDLKHSYLQLVWQQPQVLEGLKFLNLSHSKYLRETPDFSGLPNLEQLILKDCPSLCKVHQSIGDLRNLLLINLKDCTSLSSLPRKVYKLKSLRTFILSGCFKIDILEEDIVRMESLIAIVSENTVVKQVPCSIVKSIAYMSLRGFKGLLRNTFPSIIRSWMSPTMNDQYLNTPFCMDMENNDWRVLALLHRSLASLRSILVQCKTEFQLSKKVKTILVEYPVNFTESRISNHHLRFSLIGVGSYIKFLNTLNDRISEGLASSGSCKVSLPSDNHPYWLARMGEGHSVSFIVPQDCHMKGIIMCVVYLSTHGIVATEYLASVSIVNYTKCTLHIHKHGTVISFNDEDWHGIISNLESGDKVEIFVTFDHGLVVKNTIVYLIYGDSNGLEMGPCPEPEENGLNKFIKKIVMCDFW 1026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01039 1026 Gene3D - 357 441 IPR042197 -
Viun10g01039 1026 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 194 451 IPR027417 -
Viun10g01039 1026 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 23 740 IPR044974 GO:0006952
Viun10g01039 1026 Pfam TIR domain 23 185 IPR000157 GO:0007165
Viun10g01039 1026 Gene3D - 189 353 IPR027417 -
Viun10g01039 1026 ProSiteProfiles TIR domain profile. 21 188 IPR000157 GO:0007165
Viun10g01039 1026 Coils Coil 716 736 - -
Viun10g01039 1026 SUPERFAMILY "Winged helix" DNA-binding domain 428 533 IPR036390 -
Viun10g01039 1026 Gene3D Ribonuclease Inhibitor 530 745 IPR032675 -
Viun10g01039 1026 SUPERFAMILY Toll/Interleukin receptor TIR domain 17 165 IPR035897 -
Viun10g01039 1026 PRINTS Disease resistance protein signature 676 692 - -
Viun10g01039 1026 PRINTS Disease resistance protein signature 299 313 - -
Viun10g01039 1026 PRINTS Disease resistance protein signature 222 237 - -
Viun10g01039 1026 PRINTS Disease resistance protein signature 392 406 - -
Viun10g01039 1026 Pfam NB-ARC domain 203 431 IPR002182 GO:0043531
Viun10g01039 1026 SUPERFAMILY L domain-like 557 768 - -
Viun10g01039 1026 SMART till_3 22 162 IPR000157 GO:0007165
Viun10g01039 1026 Gene3D - 16 188 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01039 Viun-Chr10 16877355 16890485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01039 23 746 WRKY Transcription Factor Family AT4G12020 29.919 6.51e-77 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01039 - - vun:114165119 1533.08