Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01017 ATGGAATTGGCGACTTCATCATCCAAACGGCAACGAAAGTACGATGTGCTCATCAACTTCAGTGAAATCGAAGACATCGGCAAGAAATTTGTTTCTCATCTCGATTCTGCCCTCTCTGCTAATGGACTCACCACTTTCCTTCACCACCAGAATGCAGTGCAGCCAAAGGACATCCAACAACCTATCCTCCATCTCTGTCGGGTTGCAATTGTTGTTTTCACCAAAACTTATTCTGAATCTGCTTGGTGTCTTCATCAGCTTCAACAAATAATTGACTGGCACGAAACTTATTCCCGACATGTTCTTCCCGTATATTACGAAATTCAGCCATCTGATGTACGCCTTCAGAAGGGTGATTTTGGAAAAGCCTTTAAAGCAACTGCACACCAAACATTTTCAGAACAACAACTAGAGCATGGCATGTCCAGGTGGAGCCACGCACTCACCAAAGTTGCGAATTTCTTTGGATGGGACGAGAGCAATCACAGGAGTGATGCTGAACTAGTGGACACAATTGTTAAGAGCGTTCTTAATTTACCAGTCCTGTCTGTTACTAACTTTCCAGTTAGATTACAATCCCACGTGCAAGATGTGATTGGAACTATCAAAAATAAATCCATGGAAGTGTGTAGGATAGGGATATGTGGAATGGAAGGATCCGGTAAAACCACCCTTGCCAAAGCCATTTACAATCAAATTCATGGTACATTTACGGAGAAAAGTTTCATTGAAGATATTTCAGAAGTCAATCGAACAAGAGGGTGCATTTATTTACAAGAACAACTTCTTTCAGACGTCCTAAAAATAAAGGTGAAGATTGATCATAGCGTTGAGATGGGAACAGGTATGATTCAGCAAAGACTTCATGGGAAAAGGATGCTCATTGTACTTGACGATATGATCAATGAGTACTATCCATTATTCGACCTAAGGAAATGTTGTGCATGGTTCGGTAAAGGAACTGTAATAATCATCACAACGAAAGATGAAGAGCTACTGAGGAAGCATCAAATTGATTCTATCTTTCGGATAAATCTAATGAATGCAAATGAGTCTCTTGAGCTTTTTAGTTGGCATGCATTTCGAGAAGCAAAACCAAATGAAGAATACAGTGACCTTGCAAAAACAGTAGTTACTTATTGTGGAGGACTACCTCTTGCCCTTGAACTCATTGGAGCTTGTTTATTTGAAAGGACGAAAGAAGAATGGAATACAGTGTTGTTAAGATTAGACAATAAGATTTATTCCTTAATGTATATTGTTCCACTGATATTGAAAATAAGCTTCGACAGTTTACCGAATAAAATCGAAAAAGATTTATTCCTTGATGCATGTTGTTTCTTTGTTGGTAAAGGCAGAGCCTATGTTAAGAAAATGTTGAATGGCTGTGGAGTTGACCCTAATAGTGGAATAAGAGTTCTCATAGAACGTAACCTCATAAAAGTTAGAAAGAACAACAAATTTGGAATACATCCTTTGCTACGAGATATGGGAAGCGGAATTATTCGTGAAATTTCAGGAAAGGAACATGGGAAGAACAGTCGAATGTGGTATGATAGTGATGCAGAATATGCACTGTCAGAGAATACTCTATTTTCATCACAGAGAGCAAAAGTCATTCAAGGATTGCCTGAGAAACTATTTTTAACCAACACAGATGGCTTAAAACCTTGTCCTTTAAAGGAAACAAACACATCAAGAATATGTTGA 1710 0.386 MELATSSSKRQRKYDVLINFSEIEDIGKKFVSHLDSALSANGLTTFLHHQNAVQPKDIQQPILHLCRVAIVVFTKTYSESAWCLHQLQQIIDWHETYSRHVLPVYYEIQPSDVRLQKGDFGKAFKATAHQTFSEQQLEHGMSRWSHALTKVANFFGWDESNHRSDAELVDTIVKSVLNLPVLSVTNFPVRLQSHVQDVIGTIKNKSMEVCRIGICGMEGSGKTTLAKAIYNQIHGTFTEKSFIEDISEVNRTRGCIYLQEQLLSDVLKIKVKIDHSVEMGTGMIQQRLHGKRMLIVLDDMINEYYPLFDLRKCCAWFGKGTVIIITTKDEELLRKHQIDSIFRINLMNANESLELFSWHAFREAKPNEEYSDLAKTVVTYCGGLPLALELIGACLFERTKEEWNTVLLRLDNKIYSLMYIVPLILKISFDSLPNKIEKDLFLDACCFFVGKGRAYVKKMLNGCGVDPNSGIRVLIERNLIKVRKNNKFGIHPLLRDMGSGIIREISGKEHGKNSRMWYDSDAEYALSENTLFSSQRAKVIQGLPEKLFLTNTDGLKPCPLKETNTSRIC 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01017 569 SMART till_3 13 154 IPR000157 GO:0007165
Viun10g01017 569 ProSiteProfiles TIR domain profile. 12 180 IPR000157 GO:0007165
Viun10g01017 569 Pfam TIR domain 13 178 IPR000157 GO:0007165
Viun10g01017 569 SUPERFAMILY "Winged helix" DNA-binding domain 423 522 IPR036390 -
Viun10g01017 569 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 443 IPR027417 -
Viun10g01017 569 Gene3D - 176 341 IPR027417 -
Viun10g01017 569 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 157 IPR035897 -
Viun10g01017 569 Gene3D - 347 433 IPR042197 -
Viun10g01017 569 Gene3D - 6 175 IPR035897 -
Viun10g01017 569 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 524 IPR044974 GO:0006952
Viun10g01017 569 PRINTS Disease resistance protein signature 381 395 - -
Viun10g01017 569 PRINTS Disease resistance protein signature 211 226 - -
Viun10g01017 569 PRINTS Disease resistance protein signature 287 301 - -
Viun10g01017 569 Pfam NB-ARC domain 192 415 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01017 Viun-Chr10 16268010 16270603 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01017 12 524 WRKY Transcription Factor Family AT4G12020 25.926 1.72e-48 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01017 - - pvu:PHAVU_010G029000g 748.043