Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01004 ATGGAGATAGCTGCTGCTGCTTCTTCTTCTTCTTCATCTTCATCGTCATCCTTCTTAAACTCAGAACCGTATTTCATCTACGATGTGTTCATCAGCCATTCGGGAGAAGAAATAAGTAGAAATTTCGTTTCTCATCTCCATAATGTCCTTTTGCAAGCTCAAGTCCAAACTTTGGTTGATGAGGGGAATCTGCAGGAGGGAATGAACCTGGAAGAACACATGCGAGCAATATCAGAATCTAAGATCATAATAATCGTTTTCTCCAAAACATACATCGAATCTACTTGCAGTTTTCTAGAGTTCGAAAAAATCATTGAGTGCCACAAAACTTTCGGCCAAATAGTTTTGCCCGTATTTTACCAGATTGACCCATTCGAGGTATGTAACGAAGGTTATTTTGGAAAAGCTTTAGAAGCAGATGCACAGAAAAGTTATTCAGAAGAACAACTGGAGCATTCATTGTCCTGGTGGGTCTGTGCACTCACCATTGCTGCAGGTATCAATGGTTGGAATGTCAGAGATTTCAGGTATGATGCTGAACTTGTGGAACTAATTGCTAGCCGCGTTCAGACATTGTTGGATTATAAAGAGTTGTTTATTACCAGATTTCCTGTTGGATTAGACTCCCATGTGAAAAAGGTGATTGGATGTATTGAAAATCATTCCACCAAAGTCTGTATGATAGGGATTTGGGGAATGGGAGGGTCAGGGAAAACAACCATAGCCAAAGCCATCTACAATCGAATTTATCGTGAATTCATTGGTAAGAGTTTTATTGAAAATATTAGAGAAGCTTGTTCTAGTAGAGGCGTTCATCGTTTGCAAGAAAATCTTCTTTATGATGTCCTAAAATCCAAGTTTAAGGTGGAAAGTGTTGGGTTGGGAAGAACTATGATTGAGAATGAACTTTCTCGAAAAAAGTTACTCATTGTGCTTGATGATGTGAATGAATTTATTCAATTACAATACCTATGTGGGAATTGTGAATGGGTTGGTCAAGGAAGTGTAATAATTATTACAACCAGAGATGTACACCTACTAAACCTACTCGAAGTTACCTATGTTTTTAAAATGGATGATATGAACGAAAATGAGTCTCTTGAACTTTTTAGTTGGCATGCCTTTGGAGAAGCAAAACTAAGAAAAGAGTTGAATGAACTTGCAAAAAACATAGTTGCTTATTGTGGAGGACTACCACTGGCTCTTGAGGTTCTTGGTTCCTATTTATGTGATAGGACAAAGGAACAGTGGAAAAGTGTATTTTCAAAACTAAAAATAATTCCCAATTATGAAGTTCTACACAATTTGCGTGCTAGTTTTGACGGTTTACATGATGATACGGAAAAGGAAATATTTCTTGATGTATGTTGTTTTTTTATTGGTAAAGAGAGAGGCTATGTCACTCAGATACTAAATGGTTGTGGACTACATGCTGATATTGGAATACGAGTTCTCATAGAACGTGATCTAATTAAAGTTGAAAAGAACAACAAACTAGAAATGCATCCTTTGTTACGAGATATGGGAAGAGAAATTATTCGTCAAAGATGGCCAGTGGAACTGGAGAACAGGAGTCGATTATGGTTTCATGATGATGTAAAAGAAGTACTGACAAACAATACTGGGACAGAAGCTATTGAAGGATTATCCCTGAAGCTGCAGTTAAATAGCAGAGATTGCTTTGAAGCTCATGCTTTCGAGAAAATGGAGAGATTAAAACTGCTACAACTGGATCATGTACAACTTACTGGAGATTACGGGTACCTTTCTAAACAACTGAGATGGATTTGTTGGAAAGGGTTTCCTTCTAAATACATTCAAAACAACTTTCACATGGAAAATGTAATTGCAATTGAATTAAAACATAGTCATCTTCAACTTGTCTGGAAACAATCCCAGGTCTTAAAGTGGTTAAAATTTCTTAATCTTAGTCACTCCAAGTACTTGAGAGAAACACCTGACTTTTCTGGATTACCAAGTCTAGAAAAACTCATTCTAAAAGATTGCCCAAGTTTGTGCAAGGTACACCAATCCATTGGAGATCTCTGCAATCTACTACTGATAAATTTGAAGGACTGCACAAGTCTAAGTAGTCTCCCCAGAGAGGTATATAAATTGAAATCTTTAAGAACTTTCATCCTCTCTGGTTGTTTCAAGATTCATATAATGGAAGAAGATATAGTGCAGATGGAGTCCTTGATAACTCTAGTTACTGAAAATACAGCTGTGAAACAAGTGCCCTGTTCAATTGTAAGGTCAAAAAGCATTGGATATATATCGCTACGTCGATTTGAAGGATTGTCGAATAGTATTTTTCCTTCTATCATTCAGTATTGGATATCACCAACAATGAATCCCGAATCTTATATTCGTCCATTTTGCATGGATATAGAGAATTATTATTGGCGTGACCTTCCACCATTGCATAAAAGCCTTGCAAATATTCGAAGTGTTTTGGTTCAATGTGATGCAGATTTTCAACTATCTAAGCAAGTAAAAACAATTCTTGTTGAATATGGAGTAAATTTTACAGAATCAAGATTGTCAAATCGTGGCTTGAGGTTTTCTTTGATTGGTGTTGGAAGGTACAATGAATTCTTCAGCACTCTCAGAGACAGCGTTTCTGAGGGATTGGCATGCAGTGAGTCTTGTGAAGTTTCTCTTCCAGGTGACAATCATCCATATTGGTTGTCTCATGTGGGTGAGGGACATTCAGTTTGTTTCAATCTACCTCTGGATTGTGACATGAAGGGAATGATTTTGTGTGTTGTTTATTTATCAACCCCTGAAATCGTGGCAGCTGAATGTCTTAGAAGTGTCTTAATTGTTAATTACACAAAGTGCACATTCCAGATACACAACCATGACACACTAATTCCCTTTAATGATATAGATTGGCAGGTTATAATATCAAATTTAGGATGTGGAGACAGAGTGGAGATTTTTTTGACTTTTGGTCATGGATTGATGGTCAAGAACACAGCTGTTTATCTTATATGTGGCCAATCAAATGACTTGGAAATGGAGTCTTGTCCTGAGCCAAATGAAAATACCTTAAATAATTTCATTAAGAAAATGGTGATGTGTGACTTCTGGTAA 3099 0.3682 MEIAAAASSSSSSSSSSFLNSEPYFIYDVFISHSGEEISRNFVSHLHNVLLQAQVQTLVDEGNLQEGMNLEEHMRAISESKIIIIVFSKTYIESTCSFLEFEKIIECHKTFGQIVLPVFYQIDPFEVCNEGYFGKALEADAQKSYSEEQLEHSLSWWVCALTIAAGINGWNVRDFRYDAELVELIASRVQTLLDYKELFITRFPVGLDSHVKKVIGCIENHSTKVCMIGIWGMGGSGKTTIAKAIYNRIYREFIGKSFIENIREACSSRGVHRLQENLLYDVLKSKFKVESVGLGRTMIENELSRKKLLIVLDDVNEFIQLQYLCGNCEWVGQGSVIIITTRDVHLLNLLEVTYVFKMDDMNENESLELFSWHAFGEAKLRKELNELAKNIVAYCGGLPLALEVLGSYLCDRTKEQWKSVFSKLKIIPNYEVLHNLRASFDGLHDDTEKEIFLDVCCFFIGKERGYVTQILNGCGLHADIGIRVLIERDLIKVEKNNKLEMHPLLRDMGREIIRQRWPVELENRSRLWFHDDVKEVLTNNTGTEAIEGLSLKLQLNSRDCFEAHAFEKMERLKLLQLDHVQLTGDYGYLSKQLRWICWKGFPSKYIQNNFHMENVIAIELKHSHLQLVWKQSQVLKWLKFLNLSHSKYLRETPDFSGLPSLEKLILKDCPSLCKVHQSIGDLCNLLLINLKDCTSLSSLPREVYKLKSLRTFILSGCFKIHIMEEDIVQMESLITLVTENTAVKQVPCSIVRSKSIGYISLRRFEGLSNSIFPSIIQYWISPTMNPESYIRPFCMDIENYYWRDLPPLHKSLANIRSVLVQCDADFQLSKQVKTILVEYGVNFTESRLSNRGLRFSLIGVGRYNEFFSTLRDSVSEGLACSESCEVSLPGDNHPYWLSHVGEGHSVCFNLPLDCDMKGMILCVVYLSTPEIVAAECLRSVLIVNYTKCTFQIHNHDTLIPFNDIDWQVIISNLGCGDRVEIFLTFGHGLMVKNTAVYLICGQSNDLEMESCPEPNENTLNNFIKKMVMCDFW 1032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01004 1032 Gene3D - 198 355 IPR027417 -
Viun10g01004 1032 Gene3D Ribonuclease Inhibitor 538 788 IPR032675 -
Viun10g01004 1032 ProSiteProfiles TIR domain profile. 25 193 IPR000157 GO:0007165
Viun10g01004 1032 Pfam NB-ARC domain 209 425 IPR002182 GO:0043531
Viun10g01004 1032 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 454 IPR027417 -
Viun10g01004 1032 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 27 738 IPR044974 GO:0006952
Viun10g01004 1032 Gene3D - 26 197 IPR035897 -
Viun10g01004 1032 SUPERFAMILY Toll/Interleukin receptor TIR domain 23 170 IPR035897 -
Viun10g01004 1032 Gene3D - 360 444 IPR042197 -
Viun10g01004 1032 SUPERFAMILY L domain-like 514 807 - -
Viun10g01004 1032 PRINTS Disease resistance protein signature 302 316 - -
Viun10g01004 1032 PRINTS Disease resistance protein signature 395 409 - -
Viun10g01004 1032 PRINTS Disease resistance protein signature 227 242 - -
Viun10g01004 1032 PRINTS Disease resistance protein signature 656 672 - -
Viun10g01004 1032 SMART till_3 26 167 IPR000157 GO:0007165
Viun10g01004 1032 Pfam TIR domain 27 189 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01004 Viun-Chr10 15782833 15786811 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01004 27 750 WRKY Transcription Factor Family AT4G12020 29.088 2.74e-75 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01004 - - pvu:PHAVU_010G027900g 1428.69