Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01003 ATGGAGTTGGGTTCTTCTTCATCGTCATCATCTTCTTCCTTCTTAAAATCAGAACCCCAATTCATATACGATGTGTTCATCAACTTTTGGGGAGAAAACATGAGCAGAAAATTCGTTTCTCATCTCCATTCTGTGCTCTTACAAGCTCAAGTCAAAACTTTGATTAATGAGGAAAATCTGCAGCAGGGAAAGAAGCTGGAAGAACACATGCGCGCAATAGCAGCCTCTAAGATCGCAATAATCGTTTTCTCCCAAACATACACTGAATCTACATGCTGTCTTCGTGAGCTTGAAAAAATCGTTGAATGCCGCGAAACTTTTGGCCAAATAGTTCTGCCAATATTTTACGAGATTTACCCATTCGATGTACGTCATCAGAAAGGTGATTTTAGGAAAGCGTTGGAAGAAGCTGCACACAAAAGCTATTCAGGAGAACAAGTGGAACATGCATTCTCTAGATGGAGCAATGCACTCACCACGGTTGCAGGTATCACTGGTTGGAATGTCAGAGATTTCAGGCATGATGCTGAACTTGTGGAGGTTACTGTTAGCCGTGTTCAGACAATACTGGATTATGCAGACTTGTCTCTTACCCGATTTCCCGTTGGATTAGACCCTCATGTGAGAAAGGTAATTGAATGTATTGAAAATCATTCCAGCAAAGTCTGTATGATAGGGATATGGGGGATGGTAGGATCGGGTAAGACTACCATAGCCAAAGCCATCTACAATCGAATTTATCGTCCATTCATTGGTAAGAGTTTTATTGGAAATATTAGAGAAGATTGGAATAACAACCCTGTTCATTTGCAAGAAAATCTTCTTTATGATGTCCTAAAATCCAAGTTTGAGGTGGAAAGTGTTGGGTTGGGAAGAACTATGATCGAGAATGAGTTTTCTCGAAAAAAGTTGCTAATTGTGCTTGATGATGTGAATGAGTTTAGCCAATTAGAAAACCTATGTGGGAATCGTGATTGGTTCGGTCAAGGAACTGTGATAATCATTACAAGTAGAGATGTTCACGTGCTGAACCGACTCAAAGTTAATTACATTTATAAAATGAATGGTATGAACGAAAATGATTCCCTTGAGCTTTTTAGTTGCCATGCCTTTAGAGATTCAAAACCAAGAAAAGGCTTCGATGAATTTGCAAGAAGTATAACTGCTCATTGTGGAGGACTACCACTGGCTCTTGAGGTTCTTGGTTCCTATTTATGTGGTAGGACAAAGGATTGGTGGGAAAGTGCATTGGCAATACTAAAAGTACTTCCCACTATTCAAGTTCAAGATACATTGAGAATAAGTTTTAAAAGTTTATGCGATGACATGGAAAAGGATATTTTTCTTGATATATGTTGTTTCTTTATTGGTGAAGATAGAGGCTATGTCACCCAGATACTAAATGGATGTGGACTACATGCTGATATTGGTATAACAGTTCTCATAGAACGTGGCCTCATAGAAGTTGGAAGGAACAACAAACTTGAAATGCATCCTTTGTTAAGAGACATGGGAAGAGAAATTATTCGTCGAAGATGCCCAGAGAAACCAGGGGAAAGGAGTCGACTATGGTTTGAGGATGATATAAAAGATGTACTGAAAAGGAATACTGGGACAAAGGGTACCCAGGGATTGTCCCTGAAACATAAATCAACCAGAGGAGATTGCTTTGAAGCTCATGCTTTCAAGAAAATGAAGAGATTAAAACTGTTACAACTGGATCATGTACAACTTACTGGAGATTACGGGTACCTTTCTAAACAACTGAGATGGATTTGTTGGAAAGGGTTTCCTTCTAAATACATTCCAAACAACTTTCACATGGAAAATGTAATTGCAATTGATTTAAAACATAGTCATCTTCAACTTGTCTGGAAACAGCCCCAGGTTTTAGAGCGGTTAAAATTCCTTAATCTTAGTCACTCCAAGTACTTGATAGAAACACCTGACTTTTCTGGACTACCAAGTCTTGAAAAGCTCATTCTAAAAGATTGTCCAAGTTTGTGCAAGGTACACCAATCGATTGGACATCTCTGCAATCTATTACTGATAAATTTGAAGGACTGCACAAATTTAAGCAGTCTCCCTAGAGAGGTATATAAATTGACATCTTTAAGAACTTTCATCCTCTCTGGTTGTTTCAAGATTCACATATTGGAAGAAGATATAATGCAGATGAAATCCTTGATAACTCTAGTTACCGAAAATACAGCAGTGAAAAAAGTGCCATGTTCAATTGTAAGCTCAAAAAGCATTGGATATATATCCCTACGTGGATTTGAAGGATTGCCGCATAATATTTTTCCTTCTATCATTCGATCTTGGATGTCACCAACAATGAATCCCCAATCTTATATTAGTCTGCTTTGCCTGGATATGGAGAATGATAATTTGTCTGACCTTGTGCCTTTGTATAGAAGCCTTGCAAATCTTCGAAGTATTTTAATTGAGTGTAACACGGACTTTCAACTATCTGAGCAAGTAAAAGCAATTCTAGTTGAATACGGTGTAAATTTTACAGAATCAAGAATTTCAAATCATCCCTTGAGGTTTTCTTTGATTGGTGTTGGAAGTTACAATGAATTCTTCAACACTCTCAACGATAGCATTTCTGAGGTATTGGCAAGAAGTGAGTCTTGTGATGTTTCTCTTCCAGGTGATAACTATCCTTTTTGGTTGGCAAATATGGGTGATGGTCATTCTGTTTCTTTCACTGTGCCTAGAGATCGTAACATGAAGGGAATGATTTTTTGTGTTGTTTATTTATCAACCCCTGAAATTGTGGCAACTGAATGTCTTACAAGTGTCTTTATTGTTAATTACACAAAGTGCACATTACAAATGCACAACCATGACACGGTAATTTCCTTTAAAGATGAAGATTGGCATGGAATAATGTCAAATTTAGGATCTGGAGACAAGGTGGAGATTTTTGTGAATTGTAGTAATGGATTGGTGATCAAGAACACAACTATATATCTTATATATGGTGAATCAAATGACTTGGAAATGGAGCCTTGCCTTGAGCCAAAGGAAAATGCTTTAAATAAATTCATTATGAAAATGGTAATGTGTGACTTCTGGTAA 3087 0.3754 MELGSSSSSSSSSFLKSEPQFIYDVFINFWGENMSRKFVSHLHSVLLQAQVKTLINEENLQQGKKLEEHMRAIAASKIAIIVFSQTYTESTCCLRELEKIVECRETFGQIVLPIFYEIYPFDVRHQKGDFRKALEEAAHKSYSGEQVEHAFSRWSNALTTVAGITGWNVRDFRHDAELVEVTVSRVQTILDYADLSLTRFPVGLDPHVRKVIECIENHSSKVCMIGIWGMVGSGKTTIAKAIYNRIYRPFIGKSFIGNIREDWNNNPVHLQENLLYDVLKSKFEVESVGLGRTMIENEFSRKKLLIVLDDVNEFSQLENLCGNRDWFGQGTVIIITSRDVHVLNRLKVNYIYKMNGMNENDSLELFSCHAFRDSKPRKGFDEFARSITAHCGGLPLALEVLGSYLCGRTKDWWESALAILKVLPTIQVQDTLRISFKSLCDDMEKDIFLDICCFFIGEDRGYVTQILNGCGLHADIGITVLIERGLIEVGRNNKLEMHPLLRDMGREIIRRRCPEKPGERSRLWFEDDIKDVLKRNTGTKGTQGLSLKHKSTRGDCFEAHAFKKMKRLKLLQLDHVQLTGDYGYLSKQLRWICWKGFPSKYIPNNFHMENVIAIDLKHSHLQLVWKQPQVLERLKFLNLSHSKYLIETPDFSGLPSLEKLILKDCPSLCKVHQSIGHLCNLLLINLKDCTNLSSLPREVYKLTSLRTFILSGCFKIHILEEDIMQMKSLITLVTENTAVKKVPCSIVSSKSIGYISLRGFEGLPHNIFPSIIRSWMSPTMNPQSYISLLCLDMENDNLSDLVPLYRSLANLRSILIECNTDFQLSEQVKAILVEYGVNFTESRISNHPLRFSLIGVGSYNEFFNTLNDSISEVLARSESCDVSLPGDNYPFWLANMGDGHSVSFTVPRDRNMKGMIFCVVYLSTPEIVATECLTSVFIVNYTKCTLQMHNHDTVISFKDEDWHGIMSNLGSGDKVEIFVNCSNGLVIKNTTIYLIYGESNDLEMEPCLEPKENALNKFIMKMVMCDFW 1028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01003 1028 SMART till_3 22 164 IPR000157 GO:0007165
Viun10g01003 1028 Gene3D - 194 351 IPR027417 -
Viun10g01003 1028 SUPERFAMILY L domain-like 558 820 - -
Viun10g01003 1028 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 23 737 IPR044974 GO:0006952
Viun10g01003 1028 PRINTS Disease resistance protein signature 224 239 - -
Viun10g01003 1028 PRINTS Disease resistance protein signature 629 645 - -
Viun10g01003 1028 PRINTS Disease resistance protein signature 298 312 - -
Viun10g01003 1028 PRINTS Disease resistance protein signature 391 405 - -
Viun10g01003 1028 SUPERFAMILY "Winged helix" DNA-binding domain 428 534 IPR036390 -
Viun10g01003 1028 Gene3D Ribonuclease Inhibitor 537 837 IPR032675 -
Viun10g01003 1028 Gene3D - 356 440 IPR042197 -
Viun10g01003 1028 Gene3D - 16 192 IPR035897 -
Viun10g01003 1028 Pfam NB-ARC domain 207 420 IPR002182 GO:0043531
Viun10g01003 1028 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 199 451 IPR027417 -
Viun10g01003 1028 ProSiteProfiles TIR domain profile. 21 190 IPR000157 GO:0007165
Viun10g01003 1028 Pfam TIR domain 23 180 IPR000157 GO:0007165
Viun10g01003 1028 FunFam Disease resistance protein (TIR-NBS-LRR class) 20 192 - -
Viun10g01003 1028 SUPERFAMILY Toll/Interleukin receptor TIR domain 17 167 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01003 Viun-Chr10 15754184 15758166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01003 23 768 WRKY Transcription Factor Family AT4G12020 28.182 7.89e-74 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01003 - - pvu:PHAVU_010G027900g 1473.37