Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01002 ATGGAGTTGGGTTCTTCTTCATCGTCATCATCTTCTTCCTTCTTAAAATCAGAACCCCAATTCATATACGATGTGTTCATCAACTTTTGGGGAGAAAACATGAGCAGAAAATTCGTTTCTCATCTCCATTCTGTGCTCTTACAAGCTCAAGTCAAAACTTTGATTAATGAGGAAAATCTGCAGCAGGGAAAGAAGCTGGAAGAACACATGCGCGCAATAGCAGCCTCTAAGATCGCAATAATCGTTTTCTCCCAAACATACACTGAATCTACATGCTGTCTTCGTGAGCTTGAAAAAATCGTTGAATGCCGCGAAACTTTTGGCCAAATAGTTCTGCCAATATTTTACGAGATTTACCCATTCGATGTACGTCATCAGAAAGGTGATTTTAGGAAAGCGTTGGAAGAAGCTGCACACAAAAGCTATTCAGGAGAACAAGTGGAACATGCATTCTCTAGATGGAGCAATGCACTCACCACGGTTGCAGGTATCACTGGTTGGAATGTCAGAGATTTCAGGCATGATGCTGAACTTGTGGAGGTTACTGTTAGCCGTGTTCAGACAATACTGGATTATGCAGACTTGTCTCTTACCCGATTTCCCGTTGGATTAGACCCTCATGTGAGAAAGGTAATTGAATGTATTGAAAATCATTCCAGCAAAGTCTGTATGATAGGGATATGGGGGATGGTAGGATCGGGTAAGACTACCATAGCCAAAGCCATCTACAATCGAATTTATCGTCCATTCATTGGTAAGAGTTTTATTGGAAATATTAGAGAAGATTGGAATAACAACCCTGTTCATTTGCAAGAAAATCTTCTTTATGATGTCCTAAAATCCAAGTTTGAGGTGGAAAGTGTTGGGTTGGGAAGAACTATGATCGAGAATGAGTTTTCTCGAAAAAAGTTGCTAATTGTGCTTGATGATGTGAATGAGTTTAGCCAATTAGAAAACCTATGTGGGAATCGTGATTGGTTCGGTCAAGGAACTGTGATAATCATTACAAGTAGAGATGTTCACGTGCTGAACCGACTCAAAGTTAATTACATTTATAAAATGAATGGTATGAACGAAAATGATTCCCTTGAGCTTTTTAGTTGCCATGCCTTTAGAGATTCAAAACCAAGAAAAGGCTTCGATGAATTTGCAAGAAACATAGTTGCTTATTGTGGAGGACTACCACTGGCTCTTGAGGTTCTTGGTTCCTATTTATGTGGTAGGACAAAGGAACACTGA 1239 0.3971 MELGSSSSSSSSSFLKSEPQFIYDVFINFWGENMSRKFVSHLHSVLLQAQVKTLINEENLQQGKKLEEHMRAIAASKIAIIVFSQTYTESTCCLRELEKIVECRETFGQIVLPIFYEIYPFDVRHQKGDFRKALEEAAHKSYSGEQVEHAFSRWSNALTTVAGITGWNVRDFRHDAELVEVTVSRVQTILDYADLSLTRFPVGLDPHVRKVIECIENHSSKVCMIGIWGMVGSGKTTIAKAIYNRIYRPFIGKSFIGNIREDWNNNPVHLQENLLYDVLKSKFEVESVGLGRTMIENEFSRKKLLIVLDDVNEFSQLENLCGNRDWFGQGTVIIITSRDVHVLNRLKVNYIYKMNGMNENDSLELFSCHAFRDSKPRKGFDEFARNIVAYCGGLPLALEVLGSYLCGRTKEH 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01002 412 Gene3D - 16 192 IPR035897 -
Viun10g01002 412 SMART till_3 22 164 IPR000157 GO:0007165
Viun10g01002 412 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 199 411 IPR027417 -
Viun10g01002 412 SUPERFAMILY Toll/Interleukin receptor TIR domain 17 167 IPR035897 -
Viun10g01002 412 Gene3D - 356 412 IPR042197 -
Viun10g01002 412 PRINTS Disease resistance protein signature 391 405 - -
Viun10g01002 412 PRINTS Disease resistance protein signature 298 312 - -
Viun10g01002 412 PRINTS Disease resistance protein signature 224 239 - -
Viun10g01002 412 Pfam NB-ARC domain 207 406 IPR002182 GO:0043531
Viun10g01002 412 Gene3D - 193 351 IPR027417 -
Viun10g01002 412 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 23 410 IPR044974 GO:0006952
Viun10g01002 412 Pfam TIR domain 23 180 IPR000157 GO:0007165
Viun10g01002 412 ProSiteProfiles TIR domain profile. 21 190 IPR000157 GO:0007165
Viun10g01002 412 FunFam Disease resistance protein (TIR-NBS-LRR class) 20 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01002 Viun-Chr10 15724471 15726741 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01002 202 410 WRKY Transcription Factor Family AT5G45050 33.178 5.19e-31 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01002 - - vun:114166788 620.928