Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01000 ATGGGTGCTTGTTGGAGCAGTGGGACGAAGGCTGTGAGCCCTTCCAGTGCAGGGTTCACTTCTAGAAGTGTGAGCAGAGAGGGCTATGATATTCATTCAAGTAGCAGGAATTCATCAACCTCCATACCCATGACCCCTCGGAGTGAGGGTGAGATCTTACAATCTTCAAATTTGAAAAGCTACAGCTACAATGACCTAAGAATAGCAACAAAACATTTCAGCCCAGACAATGTCTTAGGGGAAGGTGGATTTGGTTCAGTTTTTAAGGGATGGATCGATGAACATTCCCTCTCTGTTACCAAGCCTGGTATAGGTATCGTTGTTGCTGTGAAGAAACTTAACCAAGAGGGGTTCCAGGGTCACAAGGAATGGTTGGCTGAAATCAACTATCTTGGGCAACTGCAGCATCCTAATCTTGTCAAGTTGATAGGATACTGCTTAGAGGATCAACACAGGCTTCTAGTTTATGAATACATGCCAAAGGGCAGTGTGGAGAATCATCTATTCAGGAGGGGGTCTCATTTTCACCAGCTTTCTTGGACATTAAGATTGAAAATATCCCTTGGGGCAGCTAGGGGTCTTGCTTTTCTCCATAACTCAGAAACTAAAGTCATATACAGAGACTTTAAGACTTCTAACATCCTTCTTGATACGAACTATAATGCCAGACTTTCTGATTTTGGGCTGGCCAGAGATGGACCCACTGGTGATAAGAGCCATGTTTCTACAAGGGTCATGGGAACACATGGATATGCAGCACCAGAGTATCTAGCAACAGGTCACCTGACTGCGAAGAGTGATGTGTATAGTTTTGGAGTAGTTCTTTTGGAAATGTTATCAGGAAGACGTGCCATAGACAAGAATCGGCCATCTGGGGAACAATGCTTAGTTGAATGGGCAAAACCTTACCTTGCTAACAAACGAAGGGTTTTCCGTGTGATGGATAGTCGTCTAGAAGGTCAGTATTCCCTAAACCAAGCTCAAAGAGCAGCCACGCTTGCTTTTCAGTGTCTTTCTGTGGAGCCCAAATACAGGCCAAACATGGATGAGGTGGTGAGAGTATTGGAGCAGCTACGTGACTCAAACGATGAAGTCAAAAATGGTGATCATAATAAAAAGCGTCGATTAAGTGGTTCTGGCTCTGGTCATGGCCACCCCAATGGACTCCCCACATCTGCTAGCACAGGAAGTTCTGATGCTCCCAAAAAGTTTGCTTATCCAAGGCCTTCTGCTTCGTTTCTTTAA 1245 0.4474 MGACWSSGTKAVSPSSAGFTSRSVSREGYDIHSSSRNSSTSIPMTPRSEGEILQSSNLKSYSYNDLRIATKHFSPDNVLGEGGFGSVFKGWIDEHSLSVTKPGIGIVVAVKKLNQEGFQGHKEWLAEINYLGQLQHPNLVKLIGYCLEDQHRLLVYEYMPKGSVENHLFRRGSHFHQLSWTLRLKISLGAARGLAFLHNSETKVIYRDFKTSNILLDTNYNARLSDFGLARDGPTGDKSHVSTRVMGTHGYAAPEYLATGHLTAKSDVYSFGVVLLEMLSGRRAIDKNRPSGEQCLVEWAKPYLANKRRVFRVMDSRLEGQYSLNQAQRAATLAFQCLSVEPKYRPNMDEVVRVLEQLRDSNDEVKNGDHNKKRRLSGSGSGHGHPNGLPTSASTGSSDAPKKFAYPRPSASFL 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01000 414 Gene3D Phosphorylase Kinase; domain 1 48 158 - -
Viun10g01000 414 SUPERFAMILY Protein kinase-like (PK-like) 38 355 IPR011009 -
Viun10g01000 414 MobiDBLite consensus disorder prediction 361 414 - -
Viun10g01000 414 FunFam Probable serine/threonine-protein kinase PBL8 159 375 - -
Viun10g01000 414 MobiDBLite consensus disorder prediction 384 399 - -
Viun10g01000 414 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Viun10g01000 414 MobiDBLite consensus disorder prediction 1 51 - -
Viun10g01000 414 Pfam Protein kinase domain 76 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g01000 414 ProSitePatterns Protein kinases ATP-binding region signature. 79 112 IPR017441 GO:0005524
Viun10g01000 414 PANTHER OS01G0588500 PROTEIN-RELATED 35 359 - -
Viun10g01000 414 Gene3D Transferase(Phosphotransferase) domain 1 159 381 - -
Viun10g01000 414 FunFam Serine/threonine-protein kinase BIK1 39 158 - -
Viun10g01000 414 MobiDBLite consensus disorder prediction 361 376 - -
Viun10g01000 414 CDD STKc_IRAK 79 358 - -
Viun10g01000 414 ProSiteProfiles Protein kinase domain profile. 73 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01000 Viun-Chr10 15630113 15633723 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01000 34 355 Glycoside Hydrolase AT3G07070 45.646 7.76e-99 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Viun10g01000 Pkinase 3.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01000 - - gmx:100818744 735.717