Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00995 ATGAAGGAAAGGCAACGTTGGAAGGCTGAAGAGGATGCGTTGTTATGTGCATATGTGAGAGAGTATGGTCCTAGGGAATGGAATCTTGTGTCTCAGCGCATGAACACACCTCTAAACAGGGATGCAAAGTCATGCTTAGAAAGGTGGAAGAACTACCTCAAGCCTGGCATCAAGAAAGGGTCTCTAACAGAGGAAGAGCAGAGCCTTGTAATCCGGCTTCAAGCGAAACACGGCAACAAATGGAAGAAAATTGCTGCAGAAGTTCCAGGTAGAACTGCCAAGAGGTTAGGGAAGTGGTGGGAAGTGTTCAAAGAGAAGCAACAGAGGGAGAAACAAGAGATTAACAAAGCAATTGGCCCAGTTGATAATACCAAATATGATCATATTCTTGAGACTTTTGCTGAGAAGCTAGTGAAGGAACACTCTTCACAATCATCATACCTTATGGCTTCTTCTACTGGACCCTTTATCCACACTGATGCACCTGCAACTGCTTCTGCATCTGCATCTGCACCTGCATCATTGCTTCCTCCTTGGATTTCAAATTCTAGCACCACCAATCCCTCACCAGGAATTAGGCCACATTCACCTTCTGTGACCCTTAGTCTCTCTTCCTCAACAGCACCTCCTCCCCTTTGGTTGAATGTAACAACACCTCATGGTGATAACATAGTAGTGTTAGAGTTAATAGAGTGCTGTAAGGAGTTGGAAGAAGGACATCATGCTATGGTGGCGCATCGGAAGGAGGCGGCGTGGCTGTTGAGAAGGGTGGAGCAGCAGTTGGAGGCAGAGAAGGCTAGCAGAAGGAGGGAAAAGATGGAGGAAATTGAAGCAAAGATTAAGGCTCTAAGGGAAGAACAGAATGCTGCTTTGGATAGAATAGAAACAGAATATAGAGAACAGTTAGGAGAGTTGAGGAGAGATGCAGAAAGCAAGGAGCAGAAGTTGATTGAGGAATGGAATGCAAAGCACGTGAGGGTAGTGAAGTGTATGGAACAACAAGTAGGAGGCAGAATACCCCGAATTGCTGAGCCTAATGGAAGATAA 1047 0.4556 MKERQRWKAEEDALLCAYVREYGPREWNLVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQSLVIRLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREKQEINKAIGPVDNTKYDHILETFAEKLVKEHSSQSSYLMASSTGPFIHTDAPATASASASAPASLLPPWISNSSTTNPSPGIRPHSPSVTLSLSSSTAPPPLWLNVTTPHGDNIVVLELIECCKELEEGHHAMVAHRKEAAWLLRRVEQQLEAEKASRRREKMEEIEAKIKALREEQNAALDRIETEYREQLGELRRDAESKEQKLIEEWNAKHVRVVKCMEQQVGGRIPRIAEPNGR 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00995 348 Gene3D - 4 58 - -
Viun10g00995 348 MobiDBLite consensus disorder prediction 181 204 - -
Viun10g00995 348 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 108 IPR017930 -
Viun10g00995 348 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
Viun10g00995 348 CDD SANT 6 53 IPR001005 -
Viun10g00995 348 Gene3D - 62 122 - -
Viun10g00995 348 SMART sant 3 55 IPR001005 -
Viun10g00995 348 SMART sant 58 106 IPR001005 -
Viun10g00995 348 Pfam Myb-like DNA-binding domain 7 69 - -
Viun10g00995 348 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 1 337 - -
Viun10g00995 348 FunFam MYB-related transcription factor 4 58 - -
Viun10g00995 348 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 57 IPR017930 -
Viun10g00995 348 CDD SANT 63 104 IPR001005 -
Viun10g00995 348 SUPERFAMILY Homeodomain-like 4 98 IPR009057 -
Viun10g00995 348 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
Viun10g00995 348 Coils Coil 254 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00995 Viun-Chr10 15481387 15483091 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00995 1 341 MYB Transcription Factor Family AT2G37630 58.400 1.32e-144 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun10g00995 Myb_DNA-bind_6 9.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00995 K09422 - vvi:100256209 449.899