Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00992 ATGTCGGATTTGCACTTGGAAATGAAAGAGAGGCAACGTTGGAGAGCTGAAGAGGATGCTTTATTACGTTCTTATGTCAAACAGTATGGTCCTAGGGAATGGAATCTTGTTTCTCAGCGCATGAACACACCTCTCAACAGGGATGCAAAGTCATGCTTAGAAAGGTGGAAGAACTACCTCAAGCCTGGCATCAAGAAAGGATCTCTCACCGAAGAGGAGCAGCGCCTTGTAATCCGGCTTCAAGCAAAATACGGCAACAAATGGAAGAAAATTGCAGCAGAAGTTCCAGGTAGAACTGCCAAGAGGTTAGGGAAGTGGTGGGAAGTGTTCAAAGAGAAGCAACAAAGAGAGAAGAAAGAACTCAATAGAATCCCTGACCCAATTAACAACAGCAAGTACGAGCACATACTTGAGAGTTTTGCAGAAAAACTAGTAAAGGAACAACATCCTTCACCATCATTTGTTATGTCTGCTTCTGATGGGACATTTCTGCGTACTGATACACCAGCACCTGCATCATCCTTGCTTCCTTCTTGGCTTTCCAATTCAAGTAGTGCTGCTGCTGGTCCAAGTTCCCTTTCTGTGACACTAAGTCTTTCTTCTGCAACAGTTGCTGCAGCTCCATTCTCATGGTTGCAACCTGATAGGGGACAAGACAATGCACCTTTTGCTTTGGGAAATATACCAGCTTTTAGTGAAAATATGCTGATATCTCAGATGGTGGAGCACTGCAAAGAGTTGGAAGAGGGGCAAAGAGCTTTGAGTGCTCACAAGAAGGAGGCAGCTTGGAGGTTAAGCCGGGTGGAGTTGCAGTTGGAGTCAGAGAAGGCGAGCCGGAGAAGGGAGAAGATGGAAGAGTTTGAAGCAAAGATTAAGGCTCTTCGAGAAGAGGAGAGAGCTGCTTTGAGCAGAATCGAAGCAGAGTACAAAGACGAGTTTGCTGCATTGAAGAGAGACGCCGAAAACAAGGAACAAAAGTTGGCAGAACAATGGGCTGCAAAGCATTTGCAGCTTACTAGGTTGCTAGAGCAGATAGGATGCAGAGCAGGGTTCCTTGAGCCAAATGCAAGATGA 1074 0.4572 MSDLHLEMKERQRWRAEEDALLRSYVKQYGPREWNLVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVIRLQAKYGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREKKELNRIPDPINNSKYEHILESFAEKLVKEQHPSPSFVMSASDGTFLRTDTPAPASSLLPSWLSNSSSAAAGPSSLSVTLSLSSATVAAAPFSWLQPDRGQDNAPFALGNIPAFSENMLISQMVEHCKELEEGQRALSAHKKEAAWRLSRVELQLESEKASRRREKMEEFEAKIKALREEERAALSRIEAEYKDEFAALKRDAENKEQKLAEQWAAKHLQLTRLLEQIGCRAGFLEPNAR 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00992 357 CDD SANT 70 111 IPR001005 -
Viun10g00992 357 Gene3D - 69 135 - -
Viun10g00992 357 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 8 349 - -
Viun10g00992 357 Coils Coil 277 304 - -
Viun10g00992 357 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Viun10g00992 357 Pfam Myb-like DNA-binding domain 14 75 - -
Viun10g00992 357 Gene3D - 11 65 - -
Viun10g00992 357 FunFam MYB-related transcription factor 11 65 - -
Viun10g00992 357 SUPERFAMILY Homeodomain-like 11 105 IPR009057 -
Viun10g00992 357 SMART sant 65 113 IPR001005 -
Viun10g00992 357 SMART sant 10 62 IPR001005 -
Viun10g00992 357 CDD SANT 13 60 IPR001005 -
Viun10g00992 357 Coils Coil 306 330 - -
Viun10g00992 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 6 60 IPR017930 -
Viun10g00992 357 ProSiteProfiles Myb-like domain profile. 6 60 IPR001005 -
Viun10g00992 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00992 Viun-Chr10 15442303 15446061 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00992 8 348 MYB Transcription Factor Family AT2G37630 60.929 2.31e-143 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun10g00992 Myb_DNA-bind_6 1.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00992 K09422 - gmx:100101908 569.311