Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00957 ATGTCTGCTTTGCAAAAACAAACCCAGTCATTACAAGAACTGAACCCGGAGAAGGAAAGCTGGAATATTGTTGCAAGAGTGGGTGTCCTAATCCATGCGTCTGTTAGACGCACACTGATATACAAATTCCAATCTGAAATCAAAGAGGATAAGGTTTACTGCATTCAGTCTTTTAGTGTTTCATGTAATGGTGGTTCTTATAGAACTACAAATCATGCCTATAAGATCAACTTCCAATTTGGAACGAAGGTCAATTTGGTAGAATCTACCTTAGTTCCCAATATTAGTACTGCATACACCCCTTTTTCAACCATCCAAGCACCTGGTTTTGACACAGATTACTTAGTTAATGTCATTGGAATGTTGACTGGTGTTGGAACAGAGAGAGAGTTAGAGAAAGGTGGTAAGAAGACCAAGATGAATGTCATCCTTATTCAATCTGATGGGATGTTGGATAGTACTGAATCTCCTTCTCAACCTCTTACCCAACTTGGTCAGTCTTCAAAAATTAGCTTAGAAGAAGATTTCATTAAGCTGCATCCTAGATGCTCAATTGAAGGTCTCAAAGATTTTGAACAGGAAAGTACTTTTGTAGTGAAGGCTACTATCACACATGTTCTAGATCATGATGATTGGTGGTACACAGCATGTATCTGCAACAAAGCTGTTTATCCTGACTCCAAAATGTTTTTTTGTGAGAAATGTAACAAACATGTCATTAAGGTTACACCTAGGTTTAAACTTAGACTTCGTGTAATTGATGCTACTGATTCTACAACTTTTGTTGTATTTGATCGTGATGCAAGTGCAATGTTGAAGAAATCATGCTCTGATATTCTTGACTTACAAGACAAGAACACTGCTGCTGGTAACTTGCCTAAAGAGTTTGAAGTCCTCATTGATAAGACCTATCTGTTCAAAGTTGAGTGCAAGAATGATTATAATAGCAAATTTGAGCAATCATTTAGAGTTAAAAAAGTCTGCATGGATGAAAAAATCATTGAAAGCTTTACTGATGTTGAACTTAAGTCTTTGGATGTATACTCTGCAAATGAAGAAGAAAGTAAACTTAAGCAGATTACAAATGAGATTGCACCTGATACCATTGCAGAGGATTTGCTGCTCAAATTCACTGAAGAATCAAATGATGTTGAGCCTGTAAGTGATCATTTGAACACTATAGAATCAAGCCCTGTTTCTACAGAGGAAGCTTTTGTCAATCAACCTTTAATTGATGTTGAAAATGATGACTTAACCCATAAAGAATCATCTCATCTGGATAATCTTAGCTTTGATTTGGCTACCAAAGCACGTGTCCCGGCAATTAAAAGGCAGAATCGATCTGCGCCTCAAGAAAACAAGAAGATCCCAGTGAAGATGTTGAAGAAGAAAATCAAGATTGAAAAGTGA 1410 0.3681 MSALQKQTQSLQELNPEKESWNIVARVGVLIHASVRRTLIYKFQSEIKEDKVYCIQSFSVSCNGGSYRTTNHAYKINFQFGTKVNLVESTLVPNISTAYTPFSTIQAPGFDTDYLVNVIGMLTGVGTERELEKGGKKTKMNVILIQSDGMLDSTESPSQPLTQLGQSSKISLEEDFIKLHPRCSIEGLKDFEQESTFVVKATITHVLDHDDWWYTACICNKAVYPDSKMFFCEKCNKHVIKVTPRFKLRLRVIDATDSTTFVVFDRDASAMLKKSCSDILDLQDKNTAAGNLPKEFEVLIDKTYLFKVECKNDYNSKFEQSFRVKKVCMDEKIIESFTDVELKSLDVYSANEEESKLKQITNEIAPDTIAEDLLLKFTEESNDVEPVSDHLNTIESSPVSTEEAFVNQPLIDVENDDLTHKESSHLDNLSFDLATKARVPAIKRQNRSAPQENKKIPVKMLKKKIKIEK 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00957 469 Pfam Replication factor-A C terminal domain 197 327 IPR013955 -
Viun10g00957 469 Pfam Domain of unknown function DUF223 26 114 IPR003871 -
Viun10g00957 469 Gene3D - 28 86 IPR012340 -
Viun10g00957 469 SUPERFAMILY Nucleic acid-binding proteins 183 327 IPR012340 -
Viun10g00957 469 CDD RPA1_DBD_C 197 327 IPR047192 -
Viun10g00957 469 CDD RPA1_DBD_A_like 28 84 - -
Viun10g00957 469 Gene3D - 167 336 IPR012340 -
Viun10g00957 469 PANTHER OS03G0429900 PROTEIN 185 329 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Viun10g00957 469 SUPERFAMILY Nucleic acid-binding proteins 11 88 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00957 Viun-Chr10 13926157 13928686 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00957 135 327 Core DNA Replication Machinery Family AT5G08020 25.381 4.92e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00957 - - vun:114169438 856.284