Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00955 ATGTCTCTCTCAGGTGGCGATGATGACATGGAAATGGACTTTCTCCGTGATCGGTACCAGGACAGCAGAAACTTTGAAGTTTTTCTGAGTTTCAGAGGGGAAGACACGCGCTTTTCTTTCACTTCGCATCTCTATACCGCTCTTCAGAATGCAGGAATCGTGGTTTTCAAGGATGACGAGGCACTTCCACGGGGAAATCAAATTTCACCCTCTCTGCGGCTAGCGATCGAAGAGTCTCGAATTTCTGTTGTTGTTTTCTCGAAAAATTATGCAGAGTCGTGGTGGTGTTTGAAAGAGTTAGAGAAAATAATGGAGTGTCACAGAACCATAGGGCAAGTGGTGATACCAGTGTTCTATGACGTTGATCCCTCTGAAGTGCGTCATCAAAGAGGCGACTTTGGGAAAGCATTTCAACGCCTTTTGAACAAGGTTTCGATAGAGGAAGAGGAAAAAGTGCTGGATTGGAAGCTGCGTTGGAGGACGACACTTGGTGAGACTAGTGGCATCTCAGCGGTTGAAATCCTAAATTTCAGCTTTGAAAGGGTAGACGAACACGTAGAGCGTTGGAAAGAGGCACTTTCAGAGGTTGCTCAGATCTCAGGGGTTGTAGACTTAGATCCAAGGATAAACTTCCTCGTGAAGCAGTGGGTGGAGGGACTTTGTAAGGGTGCTGAAATCCCAATTAGAGAAATGGAGATTGATGATAAGATGGACTTCCTCTTGAAGCAATGGAGGGTATTTTGCAAGCCTGTTTGCATGCTAGAGGTTGCATTCTTTGATCCAAGTGGAGACATGGAGATTTCTGATGTGATAGAATTCAACGTGAAGCGTTGTAGGGAGGCACTTTTTAAGGCTGCTGGCATCTCAGGGGGCGCGATCTTGAATTCTTGCGAAGAAATGGAGATTAGTGATGCGATAAAACTCCACATAAAATATTGGAGTGAAGCATTTTCTGAGAAAGCTGGTGCGATTGATTATTTTAGTTTTGATGAGGGAACGATTGATTGTGAGATATCGAACCTCGAGAACCATTGGAGGGAGAAACTTTGTGAAGCTTATGGTATATCAATGGATAAAGACTTACAATGGAGATATGTTTTGAAGATTTGGATGAAGGCACTTTATGGCATCTCAAAAGATGCAGTCTATACACCGAGTGTTCAAAAGCTGAAGGCTTACAATCGGATAGAGAGCCTTGTGAAACATTGGAGGATCGCACTCTCTGAAGCTGTTAGCATCTCGAGGTTGGTAGTTCAGCACTACAGGGGAATAACGGATAATGAGATCAACTACATCGAGAAGCGTGCTAGGGACACATTTCGTGAGGCTGCTGGCATCTCCGCGGTTGTTATCCTCAATTCTAGGAATGAAAGCGAGGCTGTAAAAAATATTGTTAAAAATGTTACAAGTTTGTTGGATAAGACAGAGTTGTTTGTTGCCAACAATCCCGTCGGAGTAGAATCTCGAGTGCAAGAAATGGTTCAATTGCTAGAACAAAAACAATCAAACAATGTTCTGCTACTTGGGGTATGGGGGATGGGAGGCATTGGTAAAACAACTATTGCAAAAGCAATTTACAATAAGATTGGCCGCAATTTTCAGGGAAGGAGTTTCCTTGCAGATATTAGGGAGGTTTGGGGACAAGAAGCTGGCCCCATTTGTTTACAAGAACGACTTCTATTTGATATCCACCAAGAAAACAATACAAAGATACATAACATTGAATCAGGAAAAATCATATTAAGAGAAAGACTTCACCGTAAAAGGATACTTCTTATACTTGATGATGTAAATAAGTTACAACAATTAAATGCTTTGTGTGGAAATCATGAATGGTTTGGTTCAGGGAGTAGAATAATCATCACAACCAGAGACATACATTTACTTAGAGGGAAAAGAGTTGACCAAGTTTTCGCAATGACAGGAATGGATGTAGATGAATCTATTGAGCTTTTTAGTTGGCATGCATTCAAGCAAGCAAGTCCAAAAGAAGATTTTATTGAACTTTCAAGAAATGTAGTTGCTTATGCTGGGGGATTGCCACTTGCTCTTGAAGTCCTTGGGTCTTATTTATTTGATATGGAGGTTAAAGAGTGGAAGATTGTATTGGAAAAACTCAGGAAAATTCCTAATGATGAAGTACAAGAGAAGTTAAAAATAAGTTATGATGGTTTAAGTGATGATACTGAGAAAGGAATATTTCTTGATATAGCATGTTTCTTCATAGGAAAGGATCGAAATGATGTTATACATATATTGAATGGTTGTGGACTTTTCGCAGAAAATGGAATACGTGTCTTGGTAGAGCGAAGTCTTGTAACTGTGGATGATAAGAACCGAATTGGAATGCATGATTTGCTACGGGACATGGGAAGGGAAATTATTCGTTCAAAATCACCAATGGAGCTTGAGGAGCGTAGTAGGCTATGGTTTCATGAGGATGTGCTTGATGTGTTATCAAAAGAAACCGGAACAAAATTTATTGAGGGATTGACTTTGAAGCTACCAAGAAGTAATACAAAATCTCTAAGCACTAAAGCTTTTATGAACATGAAGAAACTCAGGTTGCTCCAACTTTCTGGTGTAGAACTTGTTGGAGATTTTGAATATCTTTCCAAAGATCTTAGATGGCTTTGCTGGGATGGATTTCCTTTTTCCTTCATACCAGCAAGCTTTTATCAAGGAAGTCTAGTTTCTATTGAGTTAGAAAACAGTAAGATTACCATGGTTTGGAAAGGGACTCAGCTGATGGAGAAGTTGAAAATTCTTAATCTTAGCCATTCTCATTATTTAACAAAAACTCCAGACTTTCTAAATTTGCCTAATCTTGAAAAGCTTGTATTCATGGATTGTCCAAGGCTGTCTGAAGTTTCATATACCATTGGTCATCTCACTAAACTTCTACTAATAAACTTTCAAGATTGTATTAGCCTTCGTAACCTTCCAAGAAGTATCTATAAGTTGAAATCTCTTAAAACACTCATTCTTTCCGGTTGTCTAAAGATTGATAAGTTGGAAGAGGACATAGAACAGATGGAGTCTTTGACAACCCTTGTTGCTGATAACACTGCTATAGCAAGGTTGCCTTTTTCAATAGTTAGATCAAAAAGTATTGGATATATCTCACTATGTGGTTATGAAGGATTTTCACGCGATGTGTTTCCCTCTATCATTTGGTCTTGGATGTCTCCGGTAAATAGTCTCTCTTCTCGTGTTCATACATTCGTGGACATGTCTTCTCTTGTTTCTTTAGATGTACAAAATAGCAGTTCCAATCAGCTATCTTATATATCTGAGGAGTTTCCAAAGCTTCGAAGTCTTTGGATAGAGTGTGGGTCAGATCTTCAACTTTCTCGAGATACAACGAGTATTTTGGATGCCTTAAATGCGACAAATTATGAAGAATCTGAGTCATCTGCAACAGCATCACAAATGCAGAATGTATTTACATTAATTGAATGCAACTCAAGATCAAAATTGTTTGAGAAGACACTTTTAATTCAAATGGGAAGGAGTTGGGAAATCACACATATTCTGAAACAGAGAATTTTACAGAATATGACTACGAGTGATGACGGTCATTGTTTGCTACCTGGAGATTGTTATCCAGATTGGTTAACCTTCAACAGCGAAGGCTCTTCTGTGACTTTTGATATTCCCCAAGTAAATGGGCGTAACTTGAAGACAATGATGTGCCATATCCATTATTCTTCCTCTGACAATATAACATCAGATGGCCTGAAAAATTTGTTGGTGATAAATCACACAAAGAGCACCATTCAGCTTTATAAGAGACATGCATTAGCGTCGTTTGATGATGAGGAATGGCAGAGAGTACTATCAAACATTGAGGCTGGAAACAAGGTGCAATTTGTTGTTGTTTTCTGGAGCAGATTAACTGTCATCAAGACGTCAATTTATCTTATATACGAGGCAATTAATGAAAAAGAAGAGCACTACCATGCACCAAATATGACTATTCCTAGTTATGAATCTTCATGTGCTGTTGGGTCGATCTCTCCTCCAGTGGAATCCATGGAGGACTTAAGGGGTGCTTCCGTAAAAAGCTTAACTAAACGCTTATTGAATAAATTCTTCTCATGTAAAGGAAAAGTGGAAAAGAAGAAAAATGAAGGTTAA 4140 0.3915 MSLSGGDDDMEMDFLRDRYQDSRNFEVFLSFRGEDTRFSFTSHLYTALQNAGIVVFKDDEALPRGNQISPSLRLAIEESRISVVVFSKNYAESWWCLKELEKIMECHRTIGQVVIPVFYDVDPSEVRHQRGDFGKAFQRLLNKVSIEEEEKVLDWKLRWRTTLGETSGISAVEILNFSFERVDEHVERWKEALSEVAQISGVVDLDPRINFLVKQWVEGLCKGAEIPIREMEIDDKMDFLLKQWRVFCKPVCMLEVAFFDPSGDMEISDVIEFNVKRCREALFKAAGISGGAILNSCEEMEISDAIKLHIKYWSEAFSEKAGAIDYFSFDEGTIDCEISNLENHWREKLCEAYGISMDKDLQWRYVLKIWMKALYGISKDAVYTPSVQKLKAYNRIESLVKHWRIALSEAVSISRLVVQHYRGITDNEINYIEKRARDTFREAAGISAVVILNSRNESEAVKNIVKNVTSLLDKTELFVANNPVGVESRVQEMVQLLEQKQSNNVLLLGVWGMGGIGKTTIAKAIYNKIGRNFQGRSFLADIREVWGQEAGPICLQERLLFDIHQENNTKIHNIESGKIILRERLHRKRILLILDDVNKLQQLNALCGNHEWFGSGSRIIITTRDIHLLRGKRVDQVFAMTGMDVDESIELFSWHAFKQASPKEDFIELSRNVVAYAGGLPLALEVLGSYLFDMEVKEWKIVLEKLRKIPNDEVQEKLKISYDGLSDDTEKGIFLDIACFFIGKDRNDVIHILNGCGLFAENGIRVLVERSLVTVDDKNRIGMHDLLRDMGREIIRSKSPMELEERSRLWFHEDVLDVLSKETGTKFIEGLTLKLPRSNTKSLSTKAFMNMKKLRLLQLSGVELVGDFEYLSKDLRWLCWDGFPFSFIPASFYQGSLVSIELENSKITMVWKGTQLMEKLKILNLSHSHYLTKTPDFLNLPNLEKLVFMDCPRLSEVSYTIGHLTKLLLINFQDCISLRNLPRSIYKLKSLKTLILSGCLKIDKLEEDIEQMESLTTLVADNTAIARLPFSIVRSKSIGYISLCGYEGFSRDVFPSIIWSWMSPVNSLSSRVHTFVDMSSLVSLDVQNSSSNQLSYISEEFPKLRSLWIECGSDLQLSRDTTSILDALNATNYEESESSATASQMQNVFTLIECNSRSKLFEKTLLIQMGRSWEITHILKQRILQNMTTSDDGHCLLPGDCYPDWLTFNSEGSSVTFDIPQVNGRNLKTMMCHIHYSSSDNITSDGLKNLLVINHTKSTIQLYKRHALASFDDEEWQRVLSNIEAGNKVQFVVVFWSRLTVIKTSIYLIYEAINEKEEHYHAPNMTIPSYESSCAVGSISPPVESMEDLRGASVKSLTKRLLNKFFSCKGKVEKKKNEG 1379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00955 1379 ProSiteProfiles TIR domain profile. 23 193 IPR000157 GO:0007165
Viun10g00955 1379 PRINTS Disease resistance protein signature 584 598 - -
Viun10g00955 1379 PRINTS Disease resistance protein signature 677 691 - -
Viun10g00955 1379 PRINTS Disease resistance protein signature 986 1002 - -
Viun10g00955 1379 PRINTS Disease resistance protein signature 507 522 - -
Viun10g00955 1379 Gene3D - 451 636 IPR027417 -
Viun10g00955 1379 SUPERFAMILY Toll/Interleukin receptor TIR domain 16 169 IPR035897 -
Viun10g00955 1379 SMART AAA_5 504 644 IPR003593 GO:0016887
Viun10g00955 1379 SUPERFAMILY L domain-like 831 1113 - -
Viun10g00955 1379 Gene3D Ribonuclease Inhibitor 820 980 IPR032675 -
Viun10g00955 1379 Pfam TIR domain 25 158 IPR000157 GO:0007165
Viun10g00955 1379 Gene3D - 643 726 IPR042197 -
Viun10g00955 1379 Gene3D Ribonuclease Inhibitor 981 1130 IPR032675 -
Viun10g00955 1379 Pfam NB-ARC domain 487 714 IPR002182 GO:0043531
Viun10g00955 1379 Gene3D - 19 222 IPR035897 -
Viun10g00955 1379 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 471 737 IPR027417 -
Viun10g00955 1379 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 395 1125 IPR044974 GO:0006952
Viun10g00955 1379 SUPERFAMILY "Winged helix" DNA-binding domain 712 819 IPR036390 -
Viun10g00955 1379 SMART till_3 24 169 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00955 Viun-Chr10 13811966 13841657 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00955 708 799 WRKY Transcription Factor Family AT5G45050 35.484 3.02e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00955 - - var:108322530 2220.28