Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00885 ATGTTGAGCCGCGCGTCAAATGTTTCGGCCGAAGTGGTTGGTTCTGGTGATGGTGAGGATGAGCTGTATGAACAGCTCTGGAAGGCTTGTGCGGGACCACTGGTGGATGTTCCTCGTGTTGGCCAGAGAGTGTTCTATTTTCCACAAGGCCACATGGAGCAATTAGAGGCTTCAACCAACCAGGAATTGAATCAGAGGATTCCTCTGCTGCACCTTCCAACGAAGATCCTTTGTCGCGTCGTGAACGTTCATTTACTGGCTGAGCAAGAAACGGATGAGGTTTATGCGCAGATCACTTTGGTGCCGGAATCTAATCAAGATGAGCCTACAAGTCCTGATCCGTGCACTGCTGAACCTACAAGGGCACCGGCTCACTCGTTCTGCAAGGTCTTGACTGCCTCTGATACTAGCACCCATGGTGGCTTCTCTGTTCTCAGGAAACATGCCACTGAGTGCCTTCCTGCATTGGATATGTCCCAACCAACACCAACCCAGGAATTGGTTGCAAAGGATCTTCATGGTTATGAATGGCGGTTTAAGCATATATTTAGAGGTCAGCCACGCAGACACTTGCTTACAACTGGATGGAGTACTTTTGTGACTTCCAAAAGATTAGTTGCCGGGGATACCTTTGTGTTCTTGAGAGGGGACAATGGGGAATTACGTGTCGGAGTGAGACGTCTAGCTCGCCAGGCAAGTAGCATGCCTTCGTCTGTGATTTCCAGTCAAAGCATGCACCTGGGAGTTCTTGCAACTGCCTCTCATGCTGTTGCAACTCAGACTCTTTTTGTGGTATATTATAAGCCAAGGACGAGCCAGTTCATCATTGGAGTGAACAAGTATTTGGAGGCTGTGAGCACGAAGTTTGGTGTTGGCATGAGGTTTAAGATGAGATTCGAGGGGGATGATTCTGCTGAGACTGACAAAAGATTTTCGGGTACCATAGTTGGAATTGAAGATATTTCTCCTCATTGGGAAAATTCAAAATGGCGATCGCTCAAGGTTCAATGGGATGAACTTGCAGCTGTTCCAAGACCTGAGAGGGTTTCACCATGGGAAATAGAGCCATTTGTAGCTTCTGCTTCTACACCCTCAGTTCAACCCACTATTGTGAAGACTAAAAGGCCCCGACCATCCAGCGAGGTTCCAGATGTTGATGCAACATCCGCTGCTTCTGTTTTCTGGGATACTGATATGCCACAGCCTGATACGACACAAATCAATGTTTTGGCCGAAAGCAAACACAATGACAATACTGGTACATGGCATCATATGCAAACTGACATGAATAGTAAAAGCAACAGCAACAACACTATGTTAAGGAATCAGACCGAAGGAAGTTGGCTCTCGTCTCCCCATTCAAGTTGTCCATCTCATTTGTTTCAAGACACAACAGATGATAGCAAGAGCGTCTCAGCTTGGCCTGTTTCAAAGCCTCATCCTTCCAGATTGAACAATGAGCACGTGCTTGACCAAGTTGACAAGGAGAGCAAAGTTGAGACTGCTACAAGTTATCGGTTGTTTGGAATTGATCTTATTGATCATTCTAGGAACACACCTGCTGTAGAGAAGGCATCTCCGCATGCAGTGAATGTTCCCAAAGTTACTACTGAAGGATGCACTAGCACCTTGTCCCAAACAGATGGTGGCCATATGTCGGAGGTACCAAAGGCTTCTTCCAAGGAGAGGAAACAAGAACAGCAACAAGTGTCTCCGAAGGAGAGTCAGAGCAAGCAAATTTCTAGAAGTCGCACCAAGGTTCAAATGCAGGGTGTTGCAGTGGGTCGTGCTGTAGATTTAGCAATGTTGGATGGGTATGATCAACTTATAAATGAATTAGAGGAGATGTTTGACATAAAGGGACAGCTTCAACACAGGAATAAGTGGGAAATTGTCTTCACTGATGATGAAGGTGACATGATGCTTGTGGGAGATGATCCATGGCCTGAATTCTGTAGTATGGTGAGAAGAATCTTCATTTGCTCCAGTCAGGATGTGAAGAAGATGAACTGTGGAAGCAAACTGCCAATCTCTTCGGTGGAAGATGGGACTGTAATAAGCTCAGATACAACTGAAACCTGA 2082 0.4621 MLSRASNVSAEVVGSGDGEDELYEQLWKACAGPLVDVPRVGQRVFYFPQGHMEQLEASTNQELNQRIPLLHLPTKILCRVVNVHLLAEQETDEVYAQITLVPESNQDEPTSPDPCTAEPTRAPAHSFCKVLTASDTSTHGGFSVLRKHATECLPALDMSQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGDNGELRVGVRRLARQASSMPSSVISSQSMHLGVLATASHAVATQTLFVVYYKPRTSQFIIGVNKYLEAVSTKFGVGMRFKMRFEGDDSAETDKRFSGTIVGIEDISPHWENSKWRSLKVQWDELAAVPRPERVSPWEIEPFVASASTPSVQPTIVKTKRPRPSSEVPDVDATSAASVFWDTDMPQPDTTQINVLAESKHNDNTGTWHHMQTDMNSKSNSNNTMLRNQTEGSWLSSPHSSCPSHLFQDTTDDSKSVSAWPVSKPHPSRLNNEHVLDQVDKESKVETATSYRLFGIDLIDHSRNTPAVEKASPHAVNVPKVTTEGCTSTLSQTDGGHMSEVPKASSKERKQEQQQVSPKESQSKQISRSRTKVQMQGVAVGRAVDLAMLDGYDQLINELEEMFDIKGQLQHRNKWEIVFTDDEGDMMLVGDDPWPEFCSMVRRIFICSSQDVKKMNCGSKLPISSVEDGTVISSDTTET 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00885 693 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Viun10g00885 693 Gene3D - 288 363 - -
Viun10g00885 693 FunFam Auxin response factor 125 229 - -
Viun10g00885 693 MobiDBLite consensus disorder prediction 535 553 - -
Viun10g00885 693 MobiDBLite consensus disorder prediction 429 486 - -
Viun10g00885 693 MobiDBLite consensus disorder prediction 555 569 - -
Viun10g00885 693 Gene3D - 577 670 - -
Viun10g00885 693 ProSiteProfiles PB1 domain profile. 582 663 IPR000270 GO:0005515
Viun10g00885 693 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 21 670 IPR044835 GO:0003677|GO:0006355|GO:0009725
Viun10g00885 693 SUPERFAMILY CAD & PB1 domains 584 658 - -
Viun10g00885 693 FunFam Auxin response factor 288 361 - -
Viun10g00885 693 CDD B3_DNA 125 227 IPR003340 GO:0003677
Viun10g00885 693 Pfam AUX/IAA family 625 666 IPR033389 -
Viun10g00885 693 Pfam AUX/IAA family 560 618 IPR033389 -
Viun10g00885 693 Gene3D - 124 228 IPR015300 -
Viun10g00885 693 MobiDBLite consensus disorder prediction 521 586 - -
Viun10g00885 693 MobiDBLite consensus disorder prediction 570 586 - -
Viun10g00885 693 SMART B3_2 127 229 IPR003340 GO:0003677
Viun10g00885 693 Pfam B3 DNA binding domain 127 227 IPR003340 GO:0003677
Viun10g00885 693 FunFam Auxin response factor 577 670 - -
Viun10g00885 693 Pfam Auxin response factor 253 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Viun10g00885 693 SUPERFAMILY DNA-binding pseudobarrel domain 118 256 IPR015300 -
Viun10g00885 693 MobiDBLite consensus disorder prediction 429 472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00885 Viun-Chr10 12103205 12107840 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00885 18 675 B3 DNA Binding Superfamily AT4G23980 58.912 0.0 717
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Viun10g00885 AUX_IAA 1e-11 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00885 K14486 - gmx:100779003 1258.05