Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00884 ATGTTGAGCCGCGCGTCAAATGTTTCGGCCGAAGCAGTGGTTGGTTCTGGTGATGGTGAGGATGAGCTGTATGAACAGCTCTGGAAGGCTTGTGCGGGACCACTGGTGGATGTTCCTCGTGTTGGCCAGAGAGTGTTCTATTTTCCACAAGGCCACATGGAGCAATTAGAGGCTTCAACCAACCAGGAATTGAATCAGAGGATTCCTCTGCTGCACCTTCCAACGAAGATCCTTTGTCGCGTCGTGAACGTTCATTTACTGGCTGAGCAAGAAACGGATGAGGTTTATGCGCAGATCACTTTGGTGCCGGAATCTAATCAAGATGAGCCTACAAGTCCTGATCCGTGCACTGCTGAACCTACAAGGGCACCGGCTCACTCGTTCTGCAAGGTCTTGACTGCCTCTGATACTAGCACCCATGGTGGCTTCTCTGTTCTCAGGAAACATGCCACTGAGTGCCTTCCTGCATTGGATATGTCCCAACCAACACCAACCCAGGAATTGGTTGCAAAGGATCTTCATGGTTATGAATGGCGGTTTAAGCATATATTTAGAGGTCAGCCACGCAGACACTTGCTTACAACTGGATGGAGTACTTTTGTGACTTCCAAAAGATTAGTTGCCGGGGATACCTTTGTGTTCTTGAGAGGGGACAATGGGGAATTACGTGTCGGAGTGAGACGTCTAGCTCGCCAGGCAAGTAGCATGCCTTCGTCTGTGATTTCCAGTCAAAGCATGCACCTGGGAGTTCTTGCAACTGCCTCTCATGCTGTTGCAACTCAGACTCTTTTTGTGGTATATTATAAGCCAAGGACGAGCCAGTTCATCATTGGAGTGAACAAGTATTTGGAGGCTGTGAGCACGAAGTTTGGTGTTGGCATGAGGTTTAAGATGAGATTCGAGGGGGATGATTCTGCTGAGACTGACAAAAGATTTTCGGGTACCATAGTTGGAATTGAAGATATTTCTCCTCATTGGGAAAATTCAAAATGGCGATCGCTCAAGGTTCAATGGGATGAACTTGCAGCTGTTCCAAGACCTGAGAGGGTTTCACCATGGGAAATAGAGCCATTTGTAGCTTCTGCTTCTACACCCTCAGTTCAACCCACTATTGTGAAGACTAAAAGGCCCCGACCATCCAGCGAGGTTCCAGATGTTGATGCAACATCCGCTGCTTCTGTTTTCTGGGATACTGATATGCCACAGCCTGATACGACACAAATCAATGTTTTGGCCGAAAGCAAACACAATGACAATACTGGTACATGGCATCATATGCAAACTGACATGAATAGTAAAAGCAACAGCAACAACACTATGTTAAGGAATCAGACCGAAGGAAGTTGGCTCTCGTCTCCCCATTCAAGTTGTCCATCTCATTTGTTTCAAGACACAACAGATGATAGCAAGAGCGTCTCAGCTTGGCCTGTTTCAAAGCCTCATCCTTCCAGATTGAACAATGAGCACGTGCTTGACCAAGTTGACAAGGAGAGCAAAGTTGAGACTGCTACAAGTTATCGGTTGTTTGGAATTGATCTTATTGATCATTCTAGGAACACACCTGCTGTAGAGAAGGCATCTCCGCATGCAGTGAATGTTCCCAAAGTTACTACTGAAGGATGCACTAGCACCTTGTCCCAAACAGATGGTGGCCATATGTCGGAGGTACCAAAGGCTTCTTCCAAGGAGAGGAAACAAGAACAGCAACAAGTGTCTCCGAAGGAGAGTCAGAGCAAGCAAATTTCTAGAAGTCGCACCAAGGTTCAAATGCAGGGTGTTGCAGTGGGTCGTGCTGTAGATTTAGCAATGTTGGATGGGTATGATCAACTTATAAATGAATTAGAGGAGATGTTTGACATAAAGGGACAGCTTCAACACAGGAATAAGTGGGAAATTGTCTTCACTGATGATGAAGGTGACATGATGCTTGTGGGAGATGATCCATGGCCTGAATTCTGTAGTATGGTGAGAAGAATCTTCATTTGCTCCAGTCAGGATGTGAAGAAGATGAACTGTGGAAGCAAACTGCCAATCTCTTCGGTGGAAGATGGGACTGTAATAAGCTCAGATACAACTGAAACCTGA 2085 0.4624 MLSRASNVSAEAVVGSGDGEDELYEQLWKACAGPLVDVPRVGQRVFYFPQGHMEQLEASTNQELNQRIPLLHLPTKILCRVVNVHLLAEQETDEVYAQITLVPESNQDEPTSPDPCTAEPTRAPAHSFCKVLTASDTSTHGGFSVLRKHATECLPALDMSQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGDNGELRVGVRRLARQASSMPSSVISSQSMHLGVLATASHAVATQTLFVVYYKPRTSQFIIGVNKYLEAVSTKFGVGMRFKMRFEGDDSAETDKRFSGTIVGIEDISPHWENSKWRSLKVQWDELAAVPRPERVSPWEIEPFVASASTPSVQPTIVKTKRPRPSSEVPDVDATSAASVFWDTDMPQPDTTQINVLAESKHNDNTGTWHHMQTDMNSKSNSNNTMLRNQTEGSWLSSPHSSCPSHLFQDTTDDSKSVSAWPVSKPHPSRLNNEHVLDQVDKESKVETATSYRLFGIDLIDHSRNTPAVEKASPHAVNVPKVTTEGCTSTLSQTDGGHMSEVPKASSKERKQEQQQVSPKESQSKQISRSRTKVQMQGVAVGRAVDLAMLDGYDQLINELEEMFDIKGQLQHRNKWEIVFTDDEGDMMLVGDDPWPEFCSMVRRIFICSSQDVKKMNCGSKLPISSVEDGTVISSDTTET 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00884 694 Pfam Auxin response factor 254 335 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Viun10g00884 694 MobiDBLite consensus disorder prediction 556 570 - -
Viun10g00884 694 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 22 671 IPR044835 GO:0003677|GO:0006355|GO:0009725
Viun10g00884 694 MobiDBLite consensus disorder prediction 430 473 - -
Viun10g00884 694 CDD B3_DNA 126 228 IPR003340 GO:0003677
Viun10g00884 694 Pfam B3 DNA binding domain 128 228 IPR003340 GO:0003677
Viun10g00884 694 Gene3D - 578 671 - -
Viun10g00884 694 Gene3D - 125 229 IPR015300 -
Viun10g00884 694 ProSiteProfiles PB1 domain profile. 583 664 IPR000270 GO:0005515
Viun10g00884 694 MobiDBLite consensus disorder prediction 571 587 - -
Viun10g00884 694 Gene3D - 289 364 - -
Viun10g00884 694 SUPERFAMILY CAD & PB1 domains 585 659 - -
Viun10g00884 694 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Viun10g00884 694 MobiDBLite consensus disorder prediction 430 487 - -
Viun10g00884 694 FunFam Auxin response factor 126 230 - -
Viun10g00884 694 SMART B3_2 128 230 IPR003340 GO:0003677
Viun10g00884 694 FunFam Auxin response factor 578 671 - -
Viun10g00884 694 FunFam Auxin response factor 289 362 - -
Viun10g00884 694 SUPERFAMILY DNA-binding pseudobarrel domain 119 257 IPR015300 -
Viun10g00884 694 MobiDBLite consensus disorder prediction 535 587 - -
Viun10g00884 694 Pfam AUX/IAA family 626 667 IPR033389 -
Viun10g00884 694 Pfam AUX/IAA family 561 619 IPR033389 -
Viun10g00884 694 MobiDBLite consensus disorder prediction 536 554 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00884 Viun-Chr10 12103205 12107840 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00884 19 676 B3 DNA Binding Superfamily AT4G23980 58.912 0.0 717
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Viun10g00884 AUX_IAA 1e-11 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00884 K14486 - gmx:100779003 1254.58