LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun10g00884	ATGTTGAGCCGCGCGTCAAATGTTTCGGCCGAAGCAGTGGTTGGTTCTGGTGATGGTGAGGATGAGCTGTATGAACAGCTCTGGAAGGCTTGTGCGGGACCACTGGTGGATGTTCCTCGTGTTGGCCAGAGAGTGTTCTATTTTCCACAAGGCCACATGGAGCAATTAGAGGCTTCAACCAACCAGGAATTGAATCAGAGGATTCCTCTGCTGCACCTTCCAACGAAGATCCTTTGTCGCGTCGTGAACGTTCATTTACTGGCTGAGCAAGAAACGGATGAGGTTTATGCGCAGATCACTTTGGTGCCGGAATCTAATCAAGATGAGCCTACAAGTCCTGATCCGTGCACTGCTGAACCTACAAGGGCACCGGCTCACTCGTTCTGCAAGGTCTTGACTGCCTCTGATACTAGCACCCATGGTGGCTTCTCTGTTCTCAGGAAACATGCCACTGAGTGCCTTCCTGCATTGGATATGTCCCAACCAACACCAACCCAGGAATTGGTTGCAAAGGATCTTCATGGTTATGAATGGCGGTTTAAGCATATATTTAGAGGTCAGCCACGCAGACACTTGCTTACAACTGGATGGAGTACTTTTGTGACTTCCAAAAGATTAGTTGCCGGGGATACCTTTGTGTTCTTGAGAGGGGACAATGGGGAATTACGTGTCGGAGTGAGACGTCTAGCTCGCCAGGCAAGTAGCATGCCTTCGTCTGTGATTTCCAGTCAAAGCATGCACCTGGGAGTTCTTGCAACTGCCTCTCATGCTGTTGCAACTCAGACTCTTTTTGTGGTATATTATAAGCCAAGGACGAGCCAGTTCATCATTGGAGTGAACAAGTATTTGGAGGCTGTGAGCACGAAGTTTGGTGTTGGCATGAGGTTTAAGATGAGATTCGAGGGGGATGATTCTGCTGAGACTGACAAAAGATTTTCGGGTACCATAGTTGGAATTGAAGATATTTCTCCTCATTGGGAAAATTCAAAATGGCGATCGCTCAAGGTTCAATGGGATGAACTTGCAGCTGTTCCAAGACCTGAGAGGGTTTCACCATGGGAAATAGAGCCATTTGTAGCTTCTGCTTCTACACCCTCAGTTCAACCCACTATTGTGAAGACTAAAAGGCCCCGACCATCCAGCGAGGTTCCAGATGTTGATGCAACATCCGCTGCTTCTGTTTTCTGGGATACTGATATGCCACAGCCTGATACGACACAAATCAATGTTTTGGCCGAAAGCAAACACAATGACAATACTGGTACATGGCATCATATGCAAACTGACATGAATAGTAAAAGCAACAGCAACAACACTATGTTAAGGAATCAGACCGAAGGAAGTTGGCTCTCGTCTCCCCATTCAAGTTGTCCATCTCATTTGTTTCAAGACACAACAGATGATAGCAAGAGCGTCTCAGCTTGGCCTGTTTCAAAGCCTCATCCTTCCAGATTGAACAATGAGCACGTGCTTGACCAAGTTGACAAGGAGAGCAAAGTTGAGACTGCTACAAGTTATCGGTTGTTTGGAATTGATCTTATTGATCATTCTAGGAACACACCTGCTGTAGAGAAGGCATCTCCGCATGCAGTGAATGTTCCCAAAGTTACTACTGAAGGATGCACTAGCACCTTGTCCCAAACAGATGGTGGCCATATGTCGGAGGTACCAAAGGCTTCTTCCAAGGAGAGGAAACAAGAACAGCAACAAGTGTCTCCGAAGGAGAGTCAGAGCAAGCAAATTTCTAGAAGTCGCACCAAGGTTCAAATGCAGGGTGTTGCAGTGGGTCGTGCTGTAGATTTAGCAATGTTGGATGGGTATGATCAACTTATAAATGAATTAGAGGAGATGTTTGACATAAAGGGACAGCTTCAACACAGGAATAAGTGGGAAATTGTCTTCACTGATGATGAAGGTGACATGATGCTTGTGGGAGATGATCCATGGCCTGAATTCTGTAGTATGGTGAGAAGAATCTTCATTTGCTCCAGTCAGGATGTGAAGAAGATGAACTGTGGAAGCAAACTGCCAATCTCTTCGGTGGAAGATGGGACTGTAATAAGCTCAGATACAACTGAAACCTGA	2085	0.4624	MLSRASNVSAEAVVGSGDGEDELYEQLWKACAGPLVDVPRVGQRVFYFPQGHMEQLEASTNQELNQRIPLLHLPTKILCRVVNVHLLAEQETDEVYAQITLVPESNQDEPTSPDPCTAEPTRAPAHSFCKVLTASDTSTHGGFSVLRKHATECLPALDMSQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGDNGELRVGVRRLARQASSMPSSVISSQSMHLGVLATASHAVATQTLFVVYYKPRTSQFIIGVNKYLEAVSTKFGVGMRFKMRFEGDDSAETDKRFSGTIVGIEDISPHWENSKWRSLKVQWDELAAVPRPERVSPWEIEPFVASASTPSVQPTIVKTKRPRPSSEVPDVDATSAASVFWDTDMPQPDTTQINVLAESKHNDNTGTWHHMQTDMNSKSNSNNTMLRNQTEGSWLSSPHSSCPSHLFQDTTDDSKSVSAWPVSKPHPSRLNNEHVLDQVDKESKVETATSYRLFGIDLIDHSRNTPAVEKASPHAVNVPKVTTEGCTSTLSQTDGGHMSEVPKASSKERKQEQQQVSPKESQSKQISRSRTKVQMQGVAVGRAVDLAMLDGYDQLINELEEMFDIKGQLQHRNKWEIVFTDDEGDMMLVGDDPWPEFCSMVRRIFICSSQDVKKMNCGSKLPISSVEDGTVISSDTTET	694

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Viun10g00884	694	Pfam	Auxin response factor	254	335	IPR010525	GO:0003677\|GO:0005634\|GO:0006355\|GO:0009725
Viun10g00884	694	MobiDBLite	consensus disorder prediction	556	570	-	-
Viun10g00884	694	PANTHER	AUXIN RESPONSE FACTOR 4-RELATED	22	671	IPR044835	GO:0003677\|GO:0006355\|GO:0009725
Viun10g00884	694	MobiDBLite	consensus disorder prediction	430	473	-	-
Viun10g00884	694	CDD	B3_DNA	126	228	IPR003340	GO:0003677
Viun10g00884	694	Pfam	B3 DNA binding domain	128	228	IPR003340	GO:0003677
Viun10g00884	694	Gene3D	-	578	671	-	-
Viun10g00884	694	Gene3D	-	125	229	IPR015300	-
Viun10g00884	694	ProSiteProfiles	PB1 domain profile.	583	664	IPR000270	GO:0005515
Viun10g00884	694	MobiDBLite	consensus disorder prediction	571	587	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun10g00884	Viun-Chr10	12103205	12107840	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun10g00884	19	676	B3 DNA Binding Superfamily	AT4G23980	58.912	0.0	717

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3-ARF	Viun10g00884		AUX_IAA	1e-11	CL0072

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun10g00884	K14486		-	gmx:100779003	1254.58

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