Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00874 ATGGCTGAGGGTTTTGAGGCTTACCATGTGCCACAGCAAAGCAGAAGAGATAAGCTAAGAGTTGTGGTGACACAGAACCAACATGGTCTGGTTGAACCCTCCACTTTGCTTCCTTTGTACGACCCTTCTTCGTTCATATCTTCTGATTTGTTAACGAGCTTCCACAGCAGCCACAAACACAACTTGGGTTGTGGTGTGAAGGAAGAACGTGCAAATTTGATGATGGGTTTTGCAGGGAGAGGAGGTGAAGGTGGAGGAGTCATGAACAATGGCTCTTCTTCTTCTTTGTGTTGTTCTTCTAACTCCTCTTCGGTTTCTTATTTGGATCCCGAATCGTCGTTGCCTTTGAACCAAGCTACAATTCAGGTCATTAACAACAACAACAACATGTTTCTTTACCAAGCACAGAACCTGGGAGAGTTTGATCAGGGCTATAACAATAACAACGGTAGTGAGATCATGGTGTTTAAGCCTGAGCCTTTGTCTTTGTCTCTGTCATCACATAGCAACGGTGTGAATCTTCAGCGATATGGATCTGTGGTTTGTGGTGATAAGGTTGGTGGGGTTGGTGGGGGTGGTGGATGTGTGGTTTATGGTGGTTCTGGTTTGAATGAAGTTTCTAGGTGCACGGTGCCTATGGGGCCATTTACTGGCTATGCTTCTATATTGAAGGGATCGAGGTTTCTGAAACCTGCACAGCAATTATTGGAAGAGTTATGTGATGTTGGTGGAGTCTGTGCTGAAAAGATGGTGGCTGATGCATCATTGATGGAACCTGTTCCTCTTCCTCCTCCTGAAAATTCAAGTGAAGATCTACAAGGGGATCACGGGGGTGACCAGGGTCGCAAAAAGTCAAGACTGTTAACTATGCTTGACGAGGTTTACAGGAGGTACAGGCAATACTATCAGCAGATGCACGCAGTAGTAACATCATTTGAGTATGTTTCAGGCCTCAGCAATGCAGCTCCCTATGCAAGTTTGGCCATAAAAGCCATGTCCAAACATTTTAGATGCTTGAAGAATGCAATTACTGAGCAGCTTCAGTTTGCAAATAAAGCTCATTTTCACATCAGCAACAGGAAGGATGAATCTTCAAGGTTTGGCAACAGTGATAGAGGCCCTTACAGCCAAAGGCCAGGGTTTCTTGACCACCAACCTGTTTGGCGGCCTCAAAGAGGACTCCCTGAGCGTGCTGTGACTGTTCTCAGAGCATGGTTGTTTGAGCACTTTTTGCATCCTTATCCTACTGATACGGACAAGCTAATGTTGGCTAAACAAACTGGTCTATCTCGTAGCCAGGTGTCTAATTGGTTCATTAATGCAAGAGTAAGGCTCTGGAAACCAATGGTGGAAGAAATACATATGCTAGAAACTCGGCAGGGTCAAAAGAATTCACAGAAGGAAGAACATAGCAGGAACAAGTCAAGTGATCAATTACCGTCTGATAACTCCATTGTTTCTGAGAATCCATCTGGCTCAACAGAAAAGTTTCAGGATACTCCTTACAAGCGAGTTACAGAAGAACTTCCTAACATACCAGTTAGGACTCAGGAACAACTGAATCTTCCCTGCACAAGCAATCAGCCAGGGGGTGTTGGAGTGAGCATGGGTGGCAGTGCAAGCAATAATGTATCACTCACACTAGGACTTTATCAAAATCATGGCATTGGTTTGGCTGAACCTTTTACCCTGAATGCAGCACAGAGATTTGGTGTTGCTCTTGAAACCAACAATGAAGGCTATGTGATGAGTGGATATGAGTCACAGAATAGGCATTTTGGAAGAGATGTCATTGGGGGGCAACTGGTGCATGACTTTGCTGGCTGA 1827 0.4483 MAEGFEAYHVPQQSRRDKLRVVVTQNQHGLVEPSTLLPLYDPSSFISSDLLTSFHSSHKHNLGCGVKEERANLMMGFAGRGGEGGGVMNNGSSSSLCCSSNSSSVSYLDPESSLPLNQATIQVINNNNNMFLYQAQNLGEFDQGYNNNNGSEIMVFKPEPLSLSLSSHSNGVNLQRYGSVVCGDKVGGVGGGGGCVVYGGSGLNEVSRCTVPMGPFTGYASILKGSRFLKPAQQLLEELCDVGGVCAEKMVADASLMEPVPLPPPENSSEDLQGDHGGDQGRKKSRLLTMLDEVYRRYRQYYQQMHAVVTSFEYVSGLSNAAPYASLAIKAMSKHFRCLKNAITEQLQFANKAHFHISNRKDESSRFGNSDRGPYSQRPGFLDHQPVWRPQRGLPERAVTVLRAWLFEHFLHPYPTDTDKLMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIHMLETRQGQKNSQKEEHSRNKSSDQLPSDNSIVSENPSGSTEKFQDTPYKRVTEELPNIPVRTQEQLNLPCTSNQPGGVGVSMGGSASNNVSLTLGLYQNHGIGLAEPFTLNAAQRFGVALETNNEGYVMSGYESQNRHFGRDVIGGQLVHDFAG 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00874 608 SMART HOX_1 388 452 IPR001356 GO:0003677
Viun10g00874 608 MobiDBLite consensus disorder prediction 360 382 - -
Viun10g00874 608 MobiDBLite consensus disorder prediction 457 504 - -
Viun10g00874 608 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 114 470 - -
Viun10g00874 608 Pfam Associated with HOX 222 344 IPR006563 -
Viun10g00874 608 SUPERFAMILY Homeodomain-like 390 454 IPR009057 -
Viun10g00874 608 MobiDBLite consensus disorder prediction 257 283 - -
Viun10g00874 608 Gene3D - 391 453 - -
Viun10g00874 608 MobiDBLite consensus disorder prediction 477 499 - -
Viun10g00874 608 FunFam BEL1-like homeodomain protein 9 391 453 - -
Viun10g00874 608 ProSiteProfiles 'Homeobox' domain profile. 385 448 IPR001356 GO:0003677
Viun10g00874 608 MobiDBLite consensus disorder prediction 457 476 - -
Viun10g00874 608 Pfam Homeobox KN domain 405 444 IPR008422 GO:0003677|GO:0006355
Viun10g00874 608 SMART prehox3 217 345 IPR006563 -
Viun10g00874 608 CDD homeodomain 388 449 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00874 Viun-Chr10 11553524 11559429 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00874 152 608 Homeobox Transcription Factor Family AT5G02030 51.235 4.62e-122 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Viun10g00874 POX 4.6e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00874 - - gmx:100805512 1004.97