Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00843 ATGACCGAGGAGAAACCAGAGCAGCTTTGTTTGAAGAATAAGCAAACCGATGCTGCTTCTAGTTCTTCTGTATCAGATGGAAATGGCAGTGCTATTCCAACATCATCAAGGAAAACGGGATCAGCATTGCCGTGTAATAGGAGGACCACTGGTCCTGTTAGACGGGTAAAGGATGGTTGGACGGAAAAGGAGGATGAAACATTAAAGAATGCTGTTGAAGTTTTTAATGGCAAGAATTGGAAGAAAATAGCTGAGTTTTTTCCGGATAAATCAGAAGTTCAATGTCTTCACAGATGGAAAAAAGTTCTTAATCCTGAACTTGTTAAAGGACATTGGACAAAGGAGGAGGATGATAAAATAATTGAACTGGTGACTATACATGGACCTACAAAATGGTCTTTGATATCCCAGTCTTTGCCTGGTCGAATAGGAAAACAGTGCAGAGAACGATGGTGCAATCATCTTAGTCCAGACATAAAGAAGGATCCCTGGACTTTGGAGGAGGAATTAGCTCTTATGAAAGCTCATTGTATACATGGCAACAAATGGGCTGAAATAGCCAAGGTTCTATGTGGAAGGACTGATAATGCAATAAAGAATCACTGGAATGGTTCTTTGAAGAAAAAGAAAGATTTCTATTTAGCTAATGGAAGACTTCCGCCCATCCCAAAGAGCAGTACGGAAGCTGCTGTCAAAGATACAGTCAAACATTCTACAACTAACACAATTCATGTTTGTTCAAATAAAGGATTAGATGCCACTGTTGCATCATCATCTAAAGCTACAGACATTACTAACCTTGATAACAGTGATAAGAATCAACTAGAATCCTCTGGAATAGTTAGAGAGATTGGAGATTCTTCAAGTGTTCCACCAAAAAAATGTGCTGATTCTGATTGTGTAGACTGCAATAGATTATTCCACAGAGGTCTCCGCTGTAGTAACTTGGAATCAGGGTCAGGAGATAATTTTAAAATAAACAGGGGGCCAAAATTTGTGAATCCTGGACCCAATGCTAACCCGAGAATTGATCATTGTCTGAATTATAGTGATATGAACAGTGACAAATCAACCAGAATTTTTTATTCAAAGGAAGGTCTAACGTTTGGTTCTTTTTGTCATGAACCATCACGGCTTGATAATCCACATCCTTCAGAATCTCTTGATTTTAACATCTCTTCTGGCCTGCAGAATGAGTTCATTTCTCCACCGTTGAAGTCATGTGTTGGTTTGGTAACTCCACCTCATGTGAAGGGAATTGAATCATGCTCAGAATCTATTGAATCAATACTGAGAAAAGCAGCCAAAACATTCCCAACTCCTTCAATAATAAGGAAGAGAAGAAATGGAGGTGAATTACCTGCCACTCCCAGAAAGCTTGCAAATGCAGTTCATTCACATGTATGTAATGAAGAAGTGAGTTCAAATGATGTTTCTTGCTCTGGAGTTCATGTTCATGGCCATGGGAGTAATAGTCTCCTAAATAATGCTTTGAACATAATTCCTCTATACCGATTAGGATCCAAGCAAACAGCTATTAAGTCTTTGACGAAACAACTTGATTCTGCATTTTACATGGAAAAAAGTGCTTCTGAGATGGAAAAGTCTACTGAGAGAGTGTTGTGA 1626 0.3887 MTEEKPEQLCLKNKQTDAASSSSVSDGNGSAIPTSSRKTGSALPCNRRTTGPVRRVKDGWTEKEDETLKNAVEVFNGKNWKKIAEFFPDKSEVQCLHRWKKVLNPELVKGHWTKEEDDKIIELVTIHGPTKWSLISQSLPGRIGKQCRERWCNHLSPDIKKDPWTLEEELALMKAHCIHGNKWAEIAKVLCGRTDNAIKNHWNGSLKKKKDFYLANGRLPPIPKSSTEAAVKDTVKHSTTNTIHVCSNKGLDATVASSSKATDITNLDNSDKNQLESSGIVREIGDSSSVPPKKCADSDCVDCNRLFHRGLRCSNLESGSGDNFKINRGPKFVNPGPNANPRIDHCLNYSDMNSDKSTRIFYSKEGLTFGSFCHEPSRLDNPHPSESLDFNISSGLQNEFISPPLKSCVGLVTPPHVKGIESCSESIESILRKAAKTFPTPSIIRKRRNGGELPATPRKLANAVHSHVCNEEVSSNDVSCSGVHVHGHGSNSLLNNALNIIPLYRLGSKQTAIKSLTKQLDSAFYMEKSASEMEKSTERVL 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00843 541 PANTHER MYB PROTEIN-RELATED 44 104 - -
Viun10g00843 541 Gene3D - 108 161 - -
Viun10g00843 541 SUPERFAMILY Homeodomain-like 106 202 IPR009057 -
Viun10g00843 541 SMART sant 108 157 IPR001005 -
Viun10g00843 541 SMART sant 160 208 IPR001005 -
Viun10g00843 541 SMART sant 56 105 IPR001005 -
Viun10g00843 541 MobiDBLite consensus disorder prediction 13 46 - -
Viun10g00843 541 CDD SANT 60 103 IPR001005 -
Viun10g00843 541 FunFam Transcriptional activator Myb isoform A 109 161 - -
Viun10g00843 541 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 160 210 IPR017930 -
Viun10g00843 541 Pfam Myb-like DNA-binding domain 59 103 IPR001005 -
Viun10g00843 541 SUPERFAMILY Homeodomain-like 55 110 IPR009057 -
Viun10g00843 541 ProSiteProfiles Myb-like domain profile. 156 206 IPR001005 -
Viun10g00843 541 MobiDBLite consensus disorder prediction 1 53 - -
Viun10g00843 541 CDD SANT 112 155 IPR001005 -
Viun10g00843 541 Gene3D - 162 239 - -
Viun10g00843 541 ProSiteProfiles Myb-like domain profile. 104 155 IPR001005 -
Viun10g00843 541 Pfam Myb-like DNA-binding domain 112 170 - -
Viun10g00843 541 CDD SANT 163 203 IPR001005 -
Viun10g00843 541 Gene3D - 56 107 - -
Viun10g00843 541 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 60 103 IPR017930 -
Viun10g00843 541 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 104 159 IPR017930 -
Viun10g00843 541 ProSiteProfiles Myb-like domain profile. 57 103 IPR001005 -
Viun10g00843 541 FunFam Transcriptional activator Myb isoform A 56 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00843 Viun-Chr10 10738499 10742287 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00843 3 541 MYB Transcription Factor Family AT3G09370 41.016 2.09e-113 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun10g00843 Myb_DNA-bind_6 5.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00843 K09422 - gmx:100777236 604.364